barSeed - Barley Seed Development Database

Probe CUST_8213_PI390587928

Source Contig U35_5332

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_8213_PI390587928	Hv_44K_v2	GATGGGTTTGTAGTCCCTCAGTCCCAGTATACTGTAAGATATACTACATAAAAAAGAAAT	1618	GeneList: blue MasterList: Cell_cycle_Function_Probe_Module

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.939	1.585	1.041	0.902	0.410	0.437
Raw	107.300	142.736	79.620	113.155	17.035	20.086

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC13066	1707	3e-25	1619 - 1678	100	60 / 60	plus	ABC13066
Harvest35	U35_5332	1707	3e-25	1619 - 1678	100	60 / 60	plus

Contig Sequence (1707 bp)

>U35_5332 1707 Hv_44K_v2
CGGCGGCGGCGGCGGCGGCGGGAGCTGGAGCATCCACGGCCGCCCGGACGTGACCTCCCG
CTACGACGTCCTTGGACGCGCTGGCTCCGGCGCCTACGCCGACGTCTACCGCGGCCGTCG
TCGCTCAGACGGCGCACCGGTCGCCCTTAAGGAGGTCCACGACGCTGTCAGCGCCCAGCG
CGAGGCCGATGCCCTCCTGGCCGTCGCCTCTGAGTCCTCCCCTCATGTAGTCGCGCTCCT
CGACCACTTCCCCGGCGGCGACCACGACGATGACGTCCTCGTCCTCGAGTGGCTCCCGCT
CGACCTCGCCGCCGTCGTGCGCGAAGGGAGGCGCGCGGGCGGCCTCCCTGCCGGCCAGCT
CAAGCGATGGATGCTGCAGGTCATAGAAGGCGTCGCCGCCTGCCACCGCGCCGGACTCGT
GCACCGCGACCTCAAGCCCGGAAACCTGCTCATCTCTGAGCACGGGGTCCTCAAGGTCGC
CGATTTTGGTCAGGCCAGGATTCTTCAAGAACAGCCATCCGATGTACCAGAAATTCCTGC
TGCTCAGGAGCCAGAGACACTCACTGCAGCTGACTACCTACATGAGATTGACCAACTCCG
GGCCAGGTCCACTTATGGCGATGTCGACAGAATGAGCCTTCAGGATGGAAACACCTCCTG
TCTTGCCACTTGCAGCACAGCTGACATCGATGATGATCCATTCAGAGCCTCCTATTCGTA
TGATGCAGAAGAAGACATCGGGGATGAAGAGTCTGGTGGCTTCACTTCTTGCGTTGGAAC
AAGGTGGTTTAGAGCTCCTGAGCTCCTATATGGTTCAACCAGCTACGGTCAAGAGATTGA
CCTGTGGTCACTAGGATGCATCTTGGCTGAGCTTCTCAGTTTAGAGCCCATGTTCCCAGG
CCAATCTGATATTGACCAGATCGGTAGAATCATCGGCGTCCTGGGCAATATCACAGAAGA
GTCCTTTCCTGGCTGTTCAAATTTACCCGATTACAACAAGATCTTCTTCAGCAAGGTTGA
GAAGCCTATGGGCCTTGAAGCATCACTGCCGAACAGATCTGCTTCTGAGGTTAGCATAGT
AAAACGGCTACTTTGCTACGACCCAGTAGAGCGGGCCAGTGCTTCTGACTTGCTGAATGA
TCCGTACTTCACTGAAGAACCCTTACCCGTACCTACCGAGGCACTACAAGTCCCGGCATC
AAAGGGCGAGGACGACGACAGCTCTGTGGAAGAATGGGGTAATTACAGGGATGACAATTC
AGATTCGGACATTGACGAATTTGGTAGCATGGATGTCACCAAAACCGACAAGGGTTTCAG
CATACGCTTTTAAGTGATAAAGAAAGATGCCCACGGAAATGAAATCTTATGTATGGAACA
TTGTTGTATTCTCTGTTTGGAACATGTTGTGTGGGGAGTTCCGGTAAGTTGTATCTCATA
AACTGAGATTATGCACAGCAACAAGCATTCTATTGGTGTGAAATAAAGTTGTACTCCAAC
CAGCTATTGTAGTTCTCATTGTATGTACATGTGTTGGTGTAGTTCGTCCATTCCCAGAAC
GCGAAACATTTGCAAGTCGCCACTTCTGAATGCAAGCCTTCATTCGCCCCCTGACAAAGA
TGGGTTTGTAGTCCCTCAGTCCCAGTATACTGTAAGATATACTACATAAAAAAGAAATTT
TTTTGTGAGCAAAAAAAAAAAAAAAAA

Homology of Contig U35_5332 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g22820.1	480	0.0	protein\|cyclin-dependent kinase F-1, putative, expressed
Brachypodium v1_2	Bradi1g39510.1	447	0.0
Arabidopsis v10	AT4G28980.2	479	9e-158	\| Symbols: CDKF;1, CAK1AT \| CDK-activating kinase 1AT \| chr4:14288471-14290102 FORWARD LENGTH=479