barSeed - Barley Seed Development Database

Probe CUST_8212_PI390587928

Source Contig U35_5333

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_8212_PI390587928	Hv_44K_v2	ATGGCTACTTTGTGCTATTTTGGGTTTGTGATAATCAGATTGTGGTAATAAGCTGTCACA	1281	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.331	1.201	1.090	0.933	0.378	0.366
Raw	1750.540	2451.914	1976.160	2678.170	380.853	396.951

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction
JLOC1	JLOC1_50144.1	1472	8e-25	1369 - 1428	100	60 / 60	plus
Harvest21	ABC13077	1309	3e-25	1221 - 1280	100	60 / 60	plus
Harvest35	U35_5333	1370	3e-25	1282 - 1341	100	60 / 60	plus

Contig Sequence (1370 bp)

>U35_5333 1370 Hv_44K_v2
AGCCGCCGCCGCCGCCGCCACCCGGCTCTTCCGCCTCGCCGACGCCGCCCAGATCCAATC
CAACTCCGCCGTCCCCGTCCGCGCCGTCTTCGCGCAGCGGGTCCGGTCTCTCCGACGGCC
TCGTCGTCCTCCGCCTCCAGCGCGCCCCGCCACCCCGGTCACCTCCGTGCCACCGGAGTC
GCCCCGCCAGCCAAGGTGGTCCAATGGCTTCAGGCATCATGCTCCGACGCCTTTCCAAGA
CACTCACCATGAGCCCAGCAGCAGCAGTGGCATCTGGTATGACCAGCCAGCATCACCAGC
TTCAGCAGCGAGCACCGGTGAGCGGCACATCCAAGGGCAAGGCGAAGCTCAAAGCTGGGA
TGCCTCTGAGGCGTAGCGTCATAGCGAAGAAGGGGGGCGCGCCTGCCACTGCTGGGAGCG
GCGGCGCTGGCCGTGGTCGTCGTGAAGCCATCGAGCGTATTACTCAGATTGCAGAGTCTT
GTCTCAAGTCCTCTACTCCTCTACGGCACCTGTCCCCCAAGGAGCGTCTCCGCGAGACAA
AGCGTGAGGAGCTTGGGCTCATCTCCAAGGAACGGCAACGTGAGCTTGATATGGCCAAGG
CTGAAGCTAAAGCCAAGTCTAAGGGTAAGAGTGGAGGTGATGGTGACCGTGTTCTGATGG
GTCCGCCAGGCCTTGATTATATCAGTCTTGGCCTGGTAGATGAGGAGGCTATCCCTGAGT
ATGAGCTGACAGTTGAAGATGGACGGCGTCTTGCCAAAGAATACAGCCGTGTGCTAATGC
GACGACACCGCGCACGTCAAACTGCAGAGTCAACGCTGTTGAGGCTCAAGAAGGAGGCCA
TTGCTGCACTACCTGAGAAGCTGCGAGCTGCTGCTATGGTTCCTGACATGACCCCTTTCC
CTGCAAACCGCTACATGGCAACGCTCACGCCGCCAATTGAAGGATATATTGAAAAGGTGC
GAGACGCTGCCAAGAAGTATTCAGTGAAGGAGAAACTTCGTTGAGTTCGATTCAGGGGAG
GAAAGAGTCTTTCTCCATACAAGATGCCGAGAGTTTAGACGCTTTCTTATGCTCCTTTAA
TTCTTGGCCTGTCTAGGTTTGATGACTACTTTGTGCTATTTTGGTCTTAGATAATCAGAT
TCTGGTAATAAGCCGCCACAATTTTTATTTGCAAGATCCTGCCATGTTATTCTGACTGAA
CTGTTCACTTCAGTTTTACTCCCTCCATTCCTTTTTAATCAGCATACAAGATTTATCTGA
AGTCAAACTTTGTAAAGTTTGATGGCTACTTTGTGCTATTTTGGGTTTGTGATAATCAGA
TTGTGGTAATAAGCTGTCACATATTTTCTTTGCAAAAAAAAAAAAAAAAA

Homology of Contig U35_5333 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g32790.1	267	3e-104	protein\|expressed protein
Brachypodium v1_2	Bradi3g28570.1	266	3e-112
Arabidopsis v10	AT4G05400.1	250	2e-61	copper ion binding \| chr4:2741256-2742008 FORWARD LENGTH=250