barSeed - Barley Seed Development Database

Probe CUST_8206_PI390587928

Source Contig U35_5339

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_8206_PI390587928	Hv_44K_v2	GAGATTAGATTTACTGCTTGCTCGCCAAGCTCGCCAAGTTCGTTCAATTGTTTGAAAAAA	1534	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.571	1.361	1.084	0.785	0.379	0.420
Raw	3465.723	4611.243	3279.600	3675.500	633.102	764.588

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_38889.2	4381	6e-21	4242 - 4297	98	55 / 56	plus
JLOC1	JLOC1_38889.1	3643	6e-21	3504 - 3559	98	55 / 56	plus
Harvest21	ABC13878	1226	3e-25	1156 - 1215	100	60 / 60	plus	ABC13878
Harvest35	U35_5339	1605	3e-25	1535 - 1594	100	60 / 60	plus

Contig Sequence (1605 bp)

>U35_5339 1605 Hv_44K_v2
ACTTTTCTCTCTGTTTTGCCTCATGTTTCTGGCCCCGTGTGTTTTGCTATTGAACAGGTT
TTCCGTGTGTTCAGTGACGAGATTACAGAGACAGGTCTTCTTGATATGTTGAGAGTTGTA
AAGCTAGATTTGAAAGGCTCTCGTCGTCAAACAGATAGCGATGATGACGAAGATGAGGCT
CGTGTTGATATAGAAGATGATGATGAAATGGAAGATGCGGATGTTGGGAATGTTGATGAT
GCCACAGATGAAATGGGTGAGGAAATGGAAGATGATTCAGCTGATGAAGTAGATGAGGAT
CAGGATGATTTGGAAGAAACAGTCGACAATAAGGTAAAAGATGGAGATGATGCAGAAGCT
ACCAAAGACGGGGAAGATTCTGATGATTCAGATGGTATGGACGATGATGCTATGTTCCGT
ATTGATCCTTACATTGCGAGGATTTTCAAGGAGCGCAACAACCTTCCTGGTAGTGAAACA
CAGCAATCTCAACTTATGCGATTTAAGCTTCGCGTGCTTACTTTACTGGAGATATATCTT
CAGAGGAATCCAGGAAAAAAACTGGTGCTGGAGGTGTATGCTTTCTTAATGCAAGCTTTT
GTGAAATCACATAGCGCCGATGGCAATGAGCAGTTCAGGCAACGTATTGGTGGTATATTG
CAGAAAAGGATATTCAAAGCAAAAGAATGTCCAAAAGGCATCGATGTTGAACTTAGCAGA
CTTGAAAGTTTGCTGCAGAAGGCTCTGCATCTGGCTTCACGCTCACGATACAAAGCAGTT
GCTTCTGCGGCTCAAAATGCCACGTTTTGGATTCTGAAGATTATCAATTCCAAGGGTTGT
TCCAAGCAGGAACTTGCAAGTGTGGTCGATAAGTTCCAGTATATGCTCAACGACTACTTC
AGCAACAAGAAATCGCGGCTGAAGATTGGTTTTGTGAAGGAGGCTTTCCGCAGGAACCCC
TGGGTAGGACGGGAGCTTTTCGGCTTTGCGCTACAGAAGATCGGCAGCACGAAGGCTGAA
TACCGAAGGGTTCAAACATTGGAGCTGGTGGACTGCATATTGAAATCCTGGGTCGGCGAC
GACGTCTCAAGCGCATCAAAGGTTTTAAAGAAGCATATGGCTCTGCTGTGCGAGCTGATG
CAGGAAATCCTTACAAAGATGCCCGAAAACAAGTCGCGTCGCCAGGAAGTCCGTAGATTC
TGCACGCGGGCTCTGCAAACCGTAACAAGGCTCAATCTGAAAGAGAAGTTTCAGAAGAAG
CTAAGCTCGGAAGCGTACACCCTGTGTGAGGCACAGCTGGGAGCTGCATTTGTTCCCTTC
CGACAATGATGTGTGTGAATCGTTTCCCGAAGACGTTGAAAGGCACCAGAAATTACTTTG
GGCTGAATTAATTTTGCTTGTAATATCAGCTCCTTAGGTTTGATTAAATTAAACTGTATT
ATTTTATGATACCCAAATCAGAAAAGCTAGCTGTCAGCAATATGGAACAGTATGTGGATG
TACGACAATTGTATGAACGCCTGCCTATGTTGCTGAGATTAGATTTACTGCTTGCTCGCC
AAGCTCGCCAAGTTCGTTCAATTGTTTGAAAAAAAAAAAAAAAAA

Homology of Contig U35_5339 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g04270.1	1306	0.0	protein\|DNA polymerase V, putative, expressed
Brachypodium v1_2	Bradi3g03140.1	1311	0.0
Arabidopsis v10	AT5G64420.1	1306	7e-84	DNA polymerase V family \| chr5:25756416-25761122 FORWARD LENGTH=1306