barSeed - Barley Seed Development Database

Probe CUST_8205_PI390587928

Source Contig U35_5340

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_8205_PI390587928	Hv_44K_v2	GCCGCAACAAGTTTCATAACTTCTTCCATTATTAGAGGAAACAAGTCGAAAGTGTTCTTC	1345	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_63633.2	1090	2e-24	68 - 127	100	60 / 60	minus	ABC47726
MLOC	MLOC_63633.3	1518	2e-24	68 - 127	100	60 / 60	minus	ABC47726
MLOC	MLOC_63633.1	1281	2e-24	68 - 127	100	60 / 60	minus	ABC47726
JLOC1	JLOC1_41695.2	1917	8e-25	1557 - 1616	100	60 / 60	plus
JLOC1	JLOC1_41695.1	1489	8e-25	1129 - 1188	100	60 / 60	plus
Harvest21	ABC47726	526	3e-25	20 - 79	100	60 / 60	minus	ABC47726
Harvest35	U35_5340	1424	3e-25	1346 - 1405	100	60 / 60	plus

Contig Sequence (1424 bp)

>U35_5340 1424 Hv_44K_v2
AGCCACACAGAGCACAGCAAGAGCGCGCGCGCGCACTGAGGGCGGCGCGCCGGAATTAAC
CAGCCAGTTCAACCGTGCGCGCAACCTGGTTCACCGAGGGCTAGCAAGATCGCCCTCCAC
GGAGGCAAGCTTCCTTGTTGCGTCGACTCGGAGCAAGGCGGGCGGGCGGGGGGGCGTGAT
GGCGGCGGCGTCGTCGTCGACGGCGTCTGCGTACCGGTCGCGGTTCGGCGACACGACGCA
GACCAAGGTGTTCGTGGGCGGGCTGGCGTGGGAGACGCCGTCGGAGGGGCTCCGGCAGCA
CTTCGAGCAGTACGGCGACATCCTGGAGGCCGTGGTCATCACGGACCGCCTCACCGGCCG
CTCCAAGGGCTACGGATTCGTGACGTTCCGGGAGGCGGAGGCGGCGCGCCGGGCGGTGGA
GGACCCGAACCCGACGATCACCGGGCGGCGCGCCAACTGCAACATTGCCTCGTTGGGCCC
GCCACGGCCCGCCCAGCCTCGAGGCAGGCCGTCGCCCGGGGGCTACTGGCAGCAGGGCCC
GCAATACTACATCGCCAGCCCCAGGGCTCATCCGCAGCAGCAGCAGCAGCAGCAGCAGCA
GCAGATGGGCCTGATGCTCAGCCCTGGCCATGGCCCGGCGATCTACCACCACCACCACCC
TTCGCAGCAATACGGATACGGGTACTGGTGCCCACCTGACTATCAATACCAACAGGCCAT
GATGAGCCCTCAAGTGCTGCAGAACTACTATGCTCAGCTGTATGCCGGGCTGGCGTCGCC
GACAGCGCCACCGCCCTACCATCAGTACGTGGGGTACGTGCCGGCCCCGACGCCGAGGGC
GGCCGTGCTCTCGCCGGTGGCGCAGCAGGTCGCGGCGGGGCAGCCGTATGTGCCGCATCC
GGCGGCGGCGGCGCAGATGCAGGGCTTCTCCATGCAGGTGCCCTCTCTTCCGCACAACTT
CGCGCTGCAGCTGCCCTCTCATGCAGTCTCACTGCTGCCTCCCAACGCCACCGATATGCA
GTCGGCTGGTGGCCAGGCCTCCTCTGCAGCGGCGCCAACGAACGCGAACAACGCTCAGCA
GCAGGGCGCCTGATGGCGCATGCATATGCAGCTCAAGGCTGAGAAAAGGAGATTCTGATC
GGTTCCAAACGCCTTCGAAACTGACTGCTTTCTGATTAAATCTTTCTAATTAAAGTTATT
GTTCCCATCTCGATGGATCTGGTGCGGACGAAGTTATTAATGGTCTGTAACAGTCTCTCA
GGATGCTTTGACTAGAAAAGACAAACCATAAACATTTCTTCCTTTCGTAGTTCGTGGATT
TCTTTTTAAGTTTTGACAAGTATTCGCCGCAACAAGTTTCATAACTTCTTCCATTATTAG
AGGAAACAAGTCGAAAGTGTTCTTCTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_5340 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g11730.1	344	2e-80	protein\|RNA recognition motif containing protein, putative, expressed
Brachypodium v1_2	Bradi1g45540.1	292	3e-104
Arabidopsis v10	None