barSeed - Barley Seed Development Database

Probe CUST_8192_PI390587928

Source Contig U35_2638

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_8192_PI390587928	Hv_44K_v2	ATGCAGCATATGTGACTTGTGAACTGAACTTAAAACATGGGAGGCAAATTTTCTTTTACA	1008	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_11562.1	1009	2e-24	252 - 311	100	60 / 60	minus	ABC09102
MLOC	MLOC_11562.2	675	2e-24	18 - 77	100	60 / 60	minus	ABC09102
MLOC	AK360280	996	3e-22	938 - 996	98	58 / 59	plus	ABC09102
Harvest21	ABC09102	1154	2e-22	1081 - 1138	98	57 / 58	plus	ABC09102
Harvest35	U35_2638	1159	2e-22	1086 - 1143	98	57 / 58	plus

Contig Sequence (1159 bp)

>U35_2638 1159 Hv_44K_v2
TGCAGGAATTCGCACGAGGGCCCCTCTTCCCCTCCTCGTTCCTATCGCCGCCACCCCTCT
TCTCCTCGATTTAAGCACCACTCTCGACCCTGCTCCCCACCCCGCCCCACCCCACCGCAC
ACCCTCCTCGCACGCTCGCGGTCCCAATGGAGACAGCCGCCGCCGTGTCCATGTCCAGAT
CCGCCTGCCGCGCCACGCTCCCCTTCCCGGCTCCACCCCAGCTCCAGGGCCGCGTCGCGC
TCCCCCGCCGGGCGCTCTCCGGGGCGCCAGGGCCGAGGCAGCGCCTCGTCGCGCGCTGCG
CGGCTGCCGACGACACGGCGGCGGCGGCGGCGGAGCTCCCCATCGAGAAAAGGTTCGCCG
CCTTCCCCACCATCATGGACATCAACCAGATCCGCGAGATCCTGCCCCACAGGTTCCCCT
TCCTCCTGGTAGATAGGGTGATCGAGTACAAGGCAGGGGAATACGCCGTCGCCATCAAGA
ATGTCACGATAAATGACAACTTCTTCCCCGGCCACTTCCCGGAGCGGCCGATAATGCCCG
GGGTTCTCATGGTTGAGGCCATGGCCCAGGTCGGAGGCATCGTGATGCTGCAGCCTGAAG
TCGGCGGATCCCAGGACAATTTCTATTTTGCAGGGGTTGATAAGGTGAGGTTCAGGAAGC
CGGTGATTGCCGGGGACACTTTGGTCATGAGGATGACCCTGACCAAGTACCAGAAGAAGT
TCGGACTTGCAAAGATGGAAGGAAAAGCTTATGTGGGTGGTGATGTAGTATGCGAGGGGG
AGTTCCTCCTCATTAGCGCCAATGAATGAACAGATCTAGTGCTGTGCTATGTGATCCTCT
CACAAGATCTGATTAGAATGTGGCCAGGTTCATTTGTTGAGAGAATTGAGTTGTGAGCTC
AACTTAGAACATGGAGGCAAATTTTCTTTTACATCAGTATGTGTAATGTGAGTTGTGAGC
TCAACTTAGAACATGGGAGGCAAATTTTCTTTTACATCAGTTTGTGTAATGCAGCATATG
TGACTTGTGAACTGAACTTAAAACATGGGAGGCAAATTTTCTTTTACATCAAAAAAAAAA
AAAAAATGCAGCATATGTGACTTGTGCACTGAACTTAAAACATGGGAGGCAAATTTTCTT
TTAAAAAAAAAAAAAAAAA

Homology of Contig U35_2638 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g12840.1	352	5e-99	protein\|FabA-like domain containing protein, expressed
Brachypodium v1_2	Bradi3g18310.1	223	1e-101
Arabidopsis v10	AT2G22230.1	220	3e-94	Thioesterase superfamily protein \| chr2:9450042-9451427 FORWARD LENGTH=220