barSeed - Barley Seed Development Database

Probe CUST_8190_PI390587928

Source Contig U35_2641

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_8190_PI390587928	Hv_44K_v2	AGAAAGTTACTCTATCATGGATGGAACAACCAAAGAAACCAGCAGCTGCAACAGCAGGAG	1453	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK249381.1	1980	2e-24	1448 - 1507	100	60 / 60	plus	ABC06423
MLOC	AK365484	2036	2e-24	1424 - 1483	100	60 / 60	plus	ABC06423
MLOC	MLOC_56715.1	1150	2e-24	387 - 446	100	60 / 60	minus	ABC06423
JLOC1	JLOC1_36709.1	1244	8e-25	530 - 589	100	60 / 60	plus
Harvest21	ABC06423	2026	3e-25	1454 - 1513	100	60 / 60	plus	ABC06423
Harvest35	U35_2641	1999	3e-25	1454 - 1513	100	60 / 60	plus

Contig Sequence (1999 bp)

>U35_2641 1999 Hv_44K_v2
GTTTTTCTCTTCCTCTAACCCCTTCGTAACCGGAACCCTAACACCCAAATCCACCACTCC
CCGCCTCCGCCCTTTTCCATGGCAACCGCCAACGCCGACGCTGCCGAGGTCGAGCGGCTC
TACGAGCTCGGCGACCGACTTTCCTCAGCCAAAGACAAGTCCCAGCACGCGGCAGACTAC
GAGGCGATTATAGCGTCGGTGAAGGGGCAAAACGTTAAAGCGAAGCAGCTGGCGGCGCAG
CTCATCCCCCGTTACTTCCGGAGCTTCCCAGCCCTCGGTACCTTCGCCATGGAAGCAATG
TTCGACCTCGTTGAGATGGAAGAGCTCGCGATCAGAATACAAGCTATTCGTGGATTTCCG
CTTCTTGCCAAAGATGCAGAATTCATCTCAAAAATTGCAGATATTCTTGGTCAGCTCCTT
ACAAGTGAGGAAAATGTGGAGCGTGATGCTGTTCATAAAGCACTCATGTCTCTTATACGA
CAAGATGTTAAAAATTCTTTGCAGCCTTTATTTAAGCACGTGGAGTCAGGATCGGAGATC
CGTGAAAAGATTATTTGTTTCCTCCGAGACAAGGTTTTTCCTGTTAAAGCAGAGCTACTA
AAGCCTCAAGCAGAAATGGAAAGATATATAACTGATTTGATAAAGAAAAGTGTACAAGAT
GTTACTGGGCTGGAATTTAAATTATTCATGGATTTCCTGCGGAGTTTGAGCATATTCGGG
GATACTGCTCCTCGAGAATCCTTTCAAGAATTAATTGAAATCATTCAAGCACAAGCTGAT
CTTGATGCGCAGTTTGATGTTTCTGATATTGATCATATAGAGAGGTGGACCTCATGCATC
TATATGGCTCTGCCTATCTTCACGAGAGGTGCATCAAGCAGCAAGTTTCTCAACTATTTT
GCTAAGCAAATTGTTCCACTTTTTGATAAGATTCCCGAGGAGAAGAAACTGGATTTACTC
AAGACAGTTGCTGCTAGCTCACCATATGCTGCAGCACAAGATTCACGCCAGCTGCTTCCA
TCCGTTGTTCAATTGCTCAAGAAGTATATGCCTGGGAAGAAGGTAGATGATATTAATCAC
AGTTATGTCGAGTGCTTGCTATACACTTTTCACCATTTGGCCCATAAGACACCAAACACT
ACAAACAGTCTCTGTGGTTACAAGATCGTTACTGGACAGCCATCAGATAGACTTGGAGAG
GATTTCTCAGAACATTACAAAGATTTTATCGAGAGGCTAACTGGAACGGAAGACACGGTT
CGAGCAGCCTCGAAGAGACTAACCCAGGGAATGGCAGATTTCAACAAAGCAATATCTTCA
GCAAAGACAGAAGAAGAGAAAACTAAAATCAAATTGGATCAGCAAAAATCGACGATGACA
ATGCGGTCCTATAATAATATATTGGCAATGTCGCAGCCATTGCATGGGAAATCTCCGTTA
TTCATTGGTGATAAGAAAGTTACTCTATCATGGATGGAACAACCAAAGAAACCAGCAGCT
GCAACAGCAGGAGGGAAGAGGACCCAACCTGTTAGTAATGGGAATGCCCCTTTAAACAAG
AAGGGGCGAGGAGATGGAGGAATGCACAATCAGCTCGTGAACAGAGCTTTTGAGGGGTTA
CCCCGTGGTGGTGGTGGTGGTAGAGGCAGTGGAAGAGGGCGAGGCAGAGGAGGCCGAGGA
AGAGGTTGGGGCTACCACTGAGATCTTCCGAGAAATCGACATCCCAAGGGAGAAAGGGAT
CATTTTTCTCCTTCCATTCGAGGGTAATAGCAAGAGTCCGTTTATCTGGGTTAGCTTTTC
CGTACCAGCAAGTTGCGTGACTGTTGGGTGTACAAGGGAACAAAAGCTCATACAAAAGAT
CCTAATCGTCTGCACATCCTAGCTCTCTTGGTTTGCGGATTGTTGTTGTTTGGTTGTCCA
AACGGTACATTTTAGTCATAGAATCTGCTGTTTGAGTATATTTATTGAGGATTTTTTTTT
CAAAAAAAAAAAAAAAAAA

Homology of Contig U35_2641 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os02g20930.1	538	protein\|apoptosis inhibitor 5, putative, expressed
Brachypodium v1_2	Bradi3g11090.1	544
Arabidopsis v10	AT2G34040.1	553	Apoptosis inhibitory protein 5 (API5) \| chr2:14377957-14382246 REVERSE LENGTH=553