barSeed - Barley Seed Development Database

Probe CUST_8186_PI390587928

Source Contig U35_2645

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_8186_PI390587928	Hv_44K_v2	ACACGTTGAAAAATACTTTGGTCACAATCTGATCGGTTGCTCCTGGCTTCAACTAAAAAA	1333	GeneList: grey60 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	3.362	2.771	1.124	0.839	0.318	0.502
Raw	184.659	239.377	86.475	101.103	13.430	23.546

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK373923	1305	9e-22	1227 - 1281	100	55 / 55	plus	ABC06718 ABC06720
JLOC1	JLOC1_13742.2	1213	5e-22	1054 - 1108	100	55 / 55	plus
JLOC1	JLOC1_13742.1	614	5e-22	455 - 509	100	55 / 55	plus
Harvest35	U35_2645	1404	3e-25	1334 - 1393	100	60 / 60	plus

Contig Sequence (1404 bp)

>U35_2645 1404 Hv_44K_v2
CATGAAGCGACCGCATTAATTGCCTTGCCTCTCGTTGGAAATGACCACCACTTCCCCATT
CTCCCCTCCGCTCCCCTCCTGCCGCACTCCACAGCTGGACGCCTGCACACGTAAAAGAAA
GCCCCAAGCGTCAGGCCCCAAGTCGACTGGGCTCTCCCATCGGATCCAAGCCGAGTATGT
CGTCCTCGGTCGGAGGCGGAGGAGGCGGCGGCGCGGCTTTGGCCGGAGGGGACGTCGCTG
GCCTTCTGGACAAGGCCAAGGAGCTGGACCAGCTGCGGAAGGAGCAGGACGATGTGGCCT
CCGAGATCAACAAGATCCACAAGAAGATCATCTCCTCCCCAGAGATGGTGGATAAATCAG
TTGATGCCATGATGGCTAGGCTTCGTGGATTTTATGTGCAAGCAAGAGAACTCTCCGAGA
GTGAAATCAGTGCTTCATCTGCTTTGGTTGGACTATTAGATGGTTTGTTGCAATCTGGAG
TTTCAGCTGCACCAAGAAAAAAAATAGAAATCAGTGAACAGAAAAAGAAGAGGATGAAGT
CCGATACGGATACAACAAGATTTTCTTCTGCATCTATGAGGAGCCAACTTGACCAAGCTG
CAAACCTTAAAGGAGAGCAGGTTGCAGCGAGGGTAAAGTCGGATGATGAAAAAGACGAGT
GGTTTGTGGTGAAGGTCATACATTTCGATAAGGAAACAAAAGAATTTGAAGTACTGGATG
AGGAGCCTGGTGATGATGAAGAGAGCGCCCAAAAGTTTGAGAGGAAGTACAAGTTACCTA
TGTCATATATTATTCCATTTCCAAAGAAAGGAGATCCGTCTAGTGCTCAGGATTTTGGAC
AGGGTCGGCAAGTCTTAGCTGTTTATCCTGGCACAACAGCACTATATAGGGCCACCGTAG
CCTCTCATCGTAAGAGGAAATCTGATGATTACAATCTCTTATTTGATGATGACGAAGAGG
ATGGGAATCTACCAGAGAGAGCTGTTCCATTTTACAGAGTGGTTGCGCTCCCAGAGGGCC
ATCGGCAATGAAAAACCTCGGTGGACATCTGCCTTGCACTAGCAAATGATAGAGTGTACG
AAGATGACAGTTTTCAAGCCTGATGATGCGGTAATCTTATTTTACCTGCAGCCCACTAGA
TGGCGCAGTTCATATTATTCTACTACCATTGTATGTATATATATCTCGAGTTAGAGTTGG
CTTGCATGCCATGTATGCACATATATCTCGAGTTAAGAGTTGTAATGGAAGGCTATGTAA
ATAGAAGTTGATTGAGGGTTGTTTTAGAACAATTAAGTGATCGCCCCTATCAGAATATGT
GTTGCCTCACTTCACACGTTGAAAAATACTTTGGTCACAATCTGATCGGTTGCTCCTGGC
TTCAACTAAAAAAAAAAAAAAAAA

Homology of Contig U35_2645 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g19350.1	286	2e-143	protein\|expressed protein
Brachypodium v1_2	Bradi4g08140.1	285	2e-153
Arabidopsis v10	AT3G27460.1	270	3e-99	SGF29 tudor-like domain \| chr3:10159537-10161994 REVERSE LENGTH=270