barSeed - Barley Seed Development Database

Probe CUST_8181_PI390587928

Source Contig U35_2650

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_8181_PI390587928	Hv_44K_v2	GATCGGACTGTAAAGCTAAAGTCATTCTGTCGCAATTAAGTCTTGCTTGTTGTTAATTAT	514	GeneList: salmon MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	4.939	4.618	1.558	0.788	0.233	0.322
Raw	383.458	578.626	164.933	144.074	13.885	21.016

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK367554	534	2e-24	444 - 503	100	60 / 60	plus	ABC05986 ABC05987
Harvest21	ABC05987	602	3e-25	515 - 574	100	60 / 60	plus	ABC05987
Harvest35	U35_2650	634	3e-25	515 - 574	100	60 / 60	plus

Contig Sequence (634 bp)

>U35_2650 634 Hv_44K_v2
CACCGGACGCCGAGAGGAGGAGAGGGAGGGGGAGAGTGGTCTTTAAGATAGATACAGCAG
AAATCCCACTGCAGCAACAAAGAACAACTTGTCTCCCTTCTTCCTCCTCGTCCTCCAAGC
CAAGAAACTCCTCGTCTCCTTCAATTCGCCTCCTCCTCTTCTTCTTCTCCCTGCCAGGCC
AAGAAACTCCCAGCGTGAAAGAAGCGGGCGATCGGCGATGGGGAAGATGTGCTGCAGCCA
GGAGGAGGACGAGGCGGGGTTCAACCTGCTGCCGCTGCTCATGGCCGCCTTCGTCATCAT
GCTGCTCTTCGTCGTCTGCTCGCCGCCGCCCCGGCGCAGGCGCTGCGTCGTCGTCCCGTG
CTACTAACCTCGTGATCGGCGGCGCGGCTCTGCAGGCAGGCAGGCAAGTGTTGGTTGTGT
GGTGGGCGTTTGGTTGGTGGTGTCTGAATTTTCTGACTGATGCGTGTTGGGTGGTTCCAC
GGAAGAATAATCTCATCTCTGCTGGTTTGGAATGGATCGGACTGTAAAGCTAAAGTCATT
CTGTCGCAATTAAGTCTTGCTTGTTGTTAATTATATTCGTACTCGAAAAAAAAAAAAAAA
AATCGATTATTCTCCGAGTGAAAAAAAAAAAAAA

Homology of Contig U35_2650 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None