barSeed - Barley Seed Development Database

Probe CUST_8179_PI390587928

Source Contig U35_2654

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_8179_PI390587928	Hv_44K_v2	GACAGGATGAATGCAGTTTGCCAGACAGTGCCATGTGCTCCTGTCTTTGTTTGCAAAAAA	549	GeneList: darkolivegreen MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.440	0.569	0.880	1.441	1.315	2.179
Raw	14502.767	29073.530	40132.133	99475.000	32685.500	59273.467

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_74792.1	762	9e-22	609 - 663	100	55 / 55	plus	ABC06627 ABC40892
JLOC1	JLOC1_49861.1	926	5e-22	641 - 695	100	55 / 55	plus
Harvest21	ABC06627	597	3e-25	527 - 586	100	60 / 60	plus	ABC06627
Harvest35	U35_2654	620	3e-25	550 - 609	100	60 / 60	plus

Contig Sequence (620 bp)

>U35_2654 620 Hv_44K_v2
TCGAGCACTGTTGGCCTGCATCGCATCGCATCGCATCGGCCGAAACTCGTGAGGCGCCAA
AACTCTATCACGCGACCCCCGGCAAGGCGGCGGCGGCGGCGTCTCGGCACCGGACAGCAC
ACCCATGGCGGCGGAGGGCGGCGGCGGCGGAGGAGGGGGGAAGGTGTCGTTCAAGGTGAT
CCTCACCTCCGACCCCAAGCTCCCCTTCAAAGTGTTCAGCGTGCCGGAGGCGGCGCCCTT
CACCGCGGTGCTCAAGTTCGCCGCCGAGGAGTTCAAGGTCCCGCCCCAGACCAGCGCCAT
CATCACCAACGATGGAGTAGGCATCAACCCACAGCAAAGTGCAGGCAACGTGTTCTTGAA
GCATGGCTCGGAGCTGCGCCTCATTCCTCGCGACAGAGTTGGAGCTACGGCGGCGTCTTT
CTAGTCATTGTTAGAGTCAACAATGAAGAAACCTATATATAACAGGAATAAAAGCATGTC
GATGCTCGGTTGTATAATGGATGTAACATGGTTGAGTATAATTTGCCACCAACAGCCAGC
CCTATGATTGACAGGATGAATGCAGTTTGCCAGACAGTGCCATGTGCTCCTGTCTTTGTT
TGCAAAAAAAAAAAAAAAAA

Homology of Contig U35_2654 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g73140.1	103	1e-52	protein\|ubiquitin-fold modifier 1 precursor, putative, expressed
Brachypodium v1_2	Bradi2g61540.1	100	3e-53
Arabidopsis v10	None