barSeed - Barley Seed Development Database

Probe CUST_8178_PI390587928

Source Contig U35_2655

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_8178_PI390587928	Hv_44K_v2	AAGGATCTTATGAGTATTATGCAAGGAGTGCCTGTCAACCAGAATGCTAGTGCAACTGGA	587	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_60368.3	1206	2e-24	203 - 262	100	60 / 60	minus	ABC10837
MLOC	AK354378	4429	7e-23	476 - 535	98	59 / 60	plus	ABC10365 ABC10837
JLOC1	JLOC1_39354.1	1127	8e-25	668 - 727	100	60 / 60	plus
Harvest21	ABC10837	814	3e-25	455 - 514	100	60 / 60	plus	ABC10837
Harvest35	U35_2658	759	3e-25	401 - 460	100	60 / 60	plus
Harvest35	U35_2655	739	3e-25	588 - 647	100	60 / 60	plus

Contig Sequence (739 bp)

>U35_2655 739 Hv_44K_v2
TGGACGTTCCTCAACTGCGTATGCTTTATTTAATGAACAACTTTACACGACCAACTTGTC
AGTCTCCCAGCTCTCCGCGCTTAAAATCATCTCGAATCATCTAACACTTCAGCACCAAGC
AACTGAAAAGTAAGATAAAAATCATGGCGACACAAAGCCAACACAGCAATCAGGATCTGA
AGAAGCCTATGTACATCATTCCATCGTCTCGGTTTCAGTAATCCGTGGGAGGCTGGCGGG
GATCGTAGGCCTCGGCCTCGGGCTCAACTTGATGATCCTTCTGCAGCTGCTGCTTCTTCT
CCCTCTGCCGCGCCTTCTTGCTCACCTTGTGAGCGGCCGCTAACCAGAGGTTTCCTGCAT
CTCTCTTGGATCTCCCAACCGTTGTGGAGTCATATAAGACATATGATGATTCCTTTTTAG
TTAAAACTGCTGATGTTGGTCAGATGGTAATGGTAAGAGAAGAAGATGATCCTGCTCCAG
AAGGAGTTGAATACAAGCATGGACTTACTCCTCCAATGAGGGATGCACGCAGGCGACGTT
TTCGCAGAGAGCCTGACTTGAGTGCAGAGCTTGTTCACCGAGTTGAGAAGGATCTTATGA
GTATTATGCAAGGAGTGCCTGTCAACCAGAATGCTAGTGCAACTGGACGTGGTGAAGGCG
GTGATCGCAAGAAAGCTGCACCAGCTCCTGTACCCAAGCCTGACGTTCAAGAGCCTGCTG
CAAATCGCGAAGAAGCTGA

Homology of Contig U35_2655 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g28010.2	150	1e-56	protein\|TATA-binding protein-associated factor TAFII55 family protein, putative, expressed
Brachypodium v1_2	Bradi2g45180.2	194	9e-58
Arabidopsis v10	None