barSeed - Barley Seed Development Database

Probe CUST_8177_PI390587928

Source Contig U35_2656

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_8177_PI390587928	Hv_44K_v2	AGAAAGAACTCACAGAGCCGGGATCGGTAACTAATAGAATAGTACTACTAACTAGTAATA	50	GeneList: thistle1 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.731	1.698	1.039	0.830	0.742	0.898
Raw	656.757	585.129	346.178	410.741	132.316	179.849

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest35	U35_2656	1479	3e-25	51 - 110	100	60 / 60	minus

Contig Sequence (1479 bp)

>U35_2656 1479 Hv_44K_v2
CTCCTATAGGGCGAATTGGGCCCTTTCCATAATGCTCGAGCGGCCGCTATTATTACTAGT
TAGTAGTACTATTCTATTAGTTACCGATCCCGGCTCTGTGAGTTCTTTCTTCCGTGATGA
ACTGTCGGCACCAGTCCTACATTTTTTTCTCTGTGGACCGAGGAGAAAGGGGGCTCAGCA
GGAAGAGGATTGTACCATGAGAGAAGCACGGAGGTCAACCCGCTTCAAATATGGAACATG
GATTCTGGCAATGCAACGGAGTTGGGTCCTCATATCGATCCGAATGAATCAGTCTTTCTA
CAGAGGTCAATCTTTGCCTATTAGGCAAGAGGATAGCAAGTTCTAAATTCCGTCTCGGTA
GGACATGGATTTCTATTACTATGAAATTCATAAATGAAAATGAAGTAGTTAATGGGAGGG
CTACCGTTATCCTTTTTCTTGTATGTGTTCCTAAGAGAAGTAATTTGTCCTCATGTTTCG
AGGTCTCAAGAAAAGGGCGTGGAAACAGATAGAAACTCTTGAATGGAAATTGAAAAGAAA
TGTAGCCCCAGTTCCTTCGGAAATGGTAAGATCTTTGGCGCAAGAAGAAGGGGCGACCCA
TATCATCTTGACTTGGTTCTGCTTCCCCTCTTTTTTTAAGAATACCGAGTCGGGTTCTTC
AGCGGCCGCTGGACGCACCATCACCTGCGTATGCTTTATTTAATGAACAACTTTACACGA
CCAACTTGTCAGTCTCGCAGCTCTCCGCGCTTAAAATCATCTCGAATCATCTAACACTTC
AGCACCAAGCAACTGAAAAGTAAGATAAAAATCATGGCGACACAAAGCCAACACAGCAAT
CAGGATCTGAAGAAGCCTATGTACATCATTCCATCGTCTCGGTTTCAGTAATCCGTGGGA
GGCTGGCGGGGATCGTAGGCCTAGCGGCCGCTCGAGCACATCGCTAACATGTGGGTGGAC
CTACTGGGATGGGAACCAATCAATTCAACAGGTTGTTCTGCAGGATTCCCTTCAACTTAC
CTGTTTGGCGAAGAGGACTTGCTCTGACAGACAGTTTGGGGCATGCTTCGTCGCTATCAG
CTTCTCCCTCCAAGGTTTCCATGCTTGTCCTCTGGTTATCTTGGTCAGCTCTTTCGGTAG
CCGTTACTCCTAGCCCTAGTGCAAGGTCGTCGTGGTCTTCTCCCTGGCATGTCGCCGGCG
CAGGCACGGTGTTGGCCTTCACTGGAGCTGGAAGATCGCCTAGACTAAGCTCAAGCTCAT
TGGGTCAGGGAAAGGGAGGGGCCTTGGGACTGGGAGTGATGAGGCAAAGAGGAAACAAAT
AGCAAGTACCACATATATAGTGGGGGTCGGCCAATCAAGCAAGTAATCATCAGGTTTGAC
AAAATAAACTCAAACATGATTAAGTATCAGACAACACGTTTGCATTGCTATCTAATGCTT
GTCCCATCAACCTATCAATATTATATCATGGTCTCCTGC

Homology of Contig U35_2656 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None