barSeed - Barley Seed Development Database

Probe CUST_8176_PI390587928

Source Contig U35_2657

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_8176_PI390587928	Hv_44K_v2	AGGACCTATTAAATGCTGCTGCCATTTTCTCATGACGAGTTTCGCATTAAAATTCTGTTT	1053	GeneList: darkslateblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.561	1.939	1.102	0.752	0.254	0.324
Raw	870.528	1725.270	837.460	943.436	108.620	148.588

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_51087.3	2760	2e-24	2659 - 2718	100	60 / 60	plus	ABC10837
MLOC	MLOC_51087.1	1972	2e-24	854 - 913	100	60 / 60	minus	ABC10837 ABC39622
MLOC	MLOC_51087.2	1777	2e-24	526 - 585	100	60 / 60	minus	ABC10837
JLOC1	JLOC1_32601.4	1743	8e-25	1501 - 1560	100	60 / 60	plus
JLOC1	JLOC1_32601.3	1020	8e-25	778 - 837	100	60 / 60	plus
JLOC1	JLOC1_32601.2	1649	8e-25	1185 - 1244	100	60 / 60	plus
Harvest35	U35_2657	1151	3e-25	1054 - 1113	100	60 / 60	plus

Contig Sequence (1151 bp)

>U35_2657 1151 Hv_44K_v2
AAAAAAAAAGGAAACGCACGAGCAGAGCTCATCCTGTGTTGGGCGTGGCGGTGCTGTGCT
TCATCGATCCCCACCCAAATCGGAGCCACGCTCGCCGGCGAGATCCTTTTCCACCACCGC
ACTGATTCCTCCCTCCAAGCCTCCTCTCCATCCCGGACCTCACGCCATCGCGGACTGGCT
GGCCGGGGACTCTTAGGCGCCGGAGACCGGAGGGGGATTTGCCGGCGACCGGAGAGGAGA
GGCTCGCGCTTCGGAAACGGTCGTTGTCGTCGCCACAGAGACGTGGGCGCACGCGCGGCG
GACCTAGTGGAGGCCACTCCGAGTTGATTGCCCACGGAGTAATTGCCATGGACGAGCAGT
TCATCCTCCGTGTGCCCCCTTCTGTGGCGGAGCACATCGAGCGTCTTATGAACGAATCTG
CTGCTGGCTCATCCTCCAACCCCGAGGACGCCTCCCTCGACCTCTCCTTCTCAGATGATG
GAAGAAGTGGCACATTTATGATTGGTAACCAGAGCTTTCCTGCATCTCTCTTGGATCTCC
CAACTGTTGTGGAGTCATATAAGACATATGATGATTCATTTTTAGTTAAAGCTGCTGATA
TTGGTCAGATGGTAATGGTAAGAGAAGATGTTGATCCTGCTCCAGAAGAAGTTGAATACA
AGCATGGACTTACTCCTCCAATGAGGGACGCACGCAGGCGACGTTACCGCAGAGAGCCTG
ACTTGAATGCAGAGCTTGTTCATCGAGTTGAGAAGGATCTTATAAGTATTATGCATGGAG
TGTCTGTCAACCAAAATGCTAGTGTAACTGGAGCTGGTGAAGGTGGTGACCGCAAGAAAG
CTGCACCAGCTCCTGCACCCAAGCCTGACGCTCAAGAGCCTGCTGCAAATGCCGAAGAAG
CTGAGCCTGAGAGGAGTGACTCTGATGACTCGGAGAACTGAAGTGGGCCAGAATAGATAG
TGCAGTTGCCGTTGGCCAAGCAAACCAGTGATTTTAGCGATTCAGACTAAATAACGTGTA
TTTTTACCAAGCAGGGGTGCTTATTGTCTTGTTAGGACCTATTAAATGCTGCTGCCATTT
TCTCATGACGAGTTTCGCATTAAAATTCTGTTTTTTCAAAAAAAAAAAAAAAATAAAAAA
AAAAAAAAAAA

Homology of Contig U35_2657 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g28010.1	201	6e-85	protein\|TATA-binding protein-associated factor TAFII55 family protein, putative, expressed
Brachypodium v1_2	Bradi2g45180.2	194	1e-85
Arabidopsis v10	AT1G55300.2	239	3e-56	\| Symbols: TAF7 \| TBP-associated factor 7 \| chr1:20628154-20629490 REVERSE LENGTH=239