barSeed - Barley Seed Development Database

Probe CUST_8175_PI390587928

Source Contig U35_2658

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_8175_PI390587928	Hv_44K_v2	TGTCTTCTCCTGTACTGACTATCATCTCATCAGCAATAATAAGAGTATGACTTTGCATTC	682	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK354378	4429	2e-24	758 - 817	100	60 / 60	plus	ABC10365 ABC10837
MLOC	MLOC_60368.2	1446	2e-24	32 - 91	100	60 / 60	minus	ABC10837
MLOC	MLOC_60368.1	3032	2e-24	131 - 190	100	60 / 60	minus	ABC10837
JLOC1	JLOC1_39354.1	1127	8e-25	950 - 1009	100	60 / 60	plus
Harvest21	ABC10837	814	3e-25	737 - 796	100	60 / 60	plus	ABC10837
Harvest35	U35_2658	759	3e-25	683 - 742	100	60 / 60	plus
Harvest35	U35_37841	633	1e-23	24 - 83	98	59 / 60	minus

Contig Sequence (759 bp)

>U35_2658 759 Hv_44K_v2
GGAGCAGTTCATCCTCCGCGTGCCCCCATCCGTGGCGGAGCGGATCGAGCGTCTTATGAG
CGAATCTGCCGCCGGCTCGTCCTCCAACCCCGACGACGCCTCCCTCGACCTCTCCTTCTC
AGAGGATGGAAGGAGTGGCACATTTATGATTGGTAACCAGAGGTTTCCTGCATCTCTCTT
GGATCTCCCAACCGTTGTGGAGTCATATAAGACATATGATGATTCCTTTTTAGTTAAAAC
TGCTGATGTTGGTCAGATGGTAATGGTAAGAGAAGAAGATGATCCTGCTCCAGAAGGAGT
TGAATACAAGCATGGACTTACTCCTCCAATGAGGGATGCACGCAGGCGACGTTTTCGCAG
AGAGCCTGACTTGAGTGCAGAGCTTGTTCACCGAGTTGAGAAGGATCTTATGAGTATTAT
GCAAGGAGTGCCTGTCAACCAGAATGCTAGTGCAACTGGACGTGGTGAAGGCGGTGATCG
CAAGAAAGCTGCACCAGCTCCTGTACCCAAGCCTGACGTTCAAGAGCCTGCTGCAAATCG
CGAAGAAGCTGACGCTGATAGGAGCGACTCTGATGAGTCGGACAGCTGAAGTGGACCAGA
ATAGACAGTGCAGCTTCAGTTGGCCGAGCAAACCCAGTGTATGTATATAAGGCAATTCAG
ATCAAAGAATGCGCGCGCTTGTTGTCTTCTCCTGTACTGACTATCATCTCATCAGCAATA
ATAAGAGTATGACTTTGCATTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_2658 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g28010.1	201	2e-87	protein\|TATA-binding protein-associated factor TAFII55 family protein, putative, expressed
Brachypodium v1_2	Bradi2g45180.2	194	4e-92
Arabidopsis v10	AT1G55300.2	239	1e-58	\| Symbols: TAF7 \| TBP-associated factor 7 \| chr1:20628154-20629490 REVERSE LENGTH=239