barSeed - Barley Seed Development Database

Probe CUST_8168_PI390587928

Source Contig U35_2666

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_8168_PI390587928	Hv_44K_v2	GCCAACAATGGAGAGCTGTCGAGCAAGTACAATAAGTTACAGTCAGCATGCTGTAACGAT	2113	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.434	1.457	1.092	0.828	0.355	0.401
Raw	1106.790	1744.709	1163.058	1371.031	204.742	257.977

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_2286.1	1433	8e-25	1254 - 1313	100	60 / 60	plus
Harvest21	ABC06252	2218	3e-25	2101 - 2160	100	60 / 60	plus	ABC06252
Harvest35	U35_2666	2231	3e-25	2114 - 2173	100	60 / 60	plus

Contig Sequence (2231 bp)

>U35_2666 2231 Hv_44K_v2
AGCCACCAGTATCCGACCCCCGATCCTCCCGCTCGGCCGCTCGCGCCGCCGTGCACATAG
CGGGCGCCAATGGAGCGCATCCACCTCGCGGTGTCCCACCGCCCGGCTCTCCCGCTTCCC
ACTCCTCACAACCACCTCCGCCGCCGCCATCTCCAGCTGCAGCCCTCCGCTAATTCTCTC
TCCCTCTCCCGCCCCATCTCCCCTCACATCTCCCTGGCCACACGCCGCCACCTCCATCCT
CTCCTCGCCTCCGCGTCCGCCACCCAAGCTTCAAGCCCGAACACTGAGCCCGCACCGGCG
CCACCCCTCGCCGCGGCCTCGTCCGGCGCGAAGCTGCTCCCACTCGTCGCCTCCATCGCG
GTCGGCCTCGCAGTGCGATTCCTGGCGCCGCGGCCCCCCGAGGTGACTCCGCAGGCGTGG
CAGCTCCTCTCCATCTTCCTCTCCACCATCGCAGGGCTCGTCCTCGGGCCGCTCCCAGTC
GGCGCGTGGGCATTCCTCGGCCTCACTGCTACCGTGGCCACGGGTACGCTCCCGTTCACG
GCGGCGTTCGGGGCATTCACCAACGAGGTCATCTGGCTCATCGTCATCTCCTTCTTCTTT
GCACGGGGGTTCGTCAAGACCGGCCTCGGCGACCGCGTTGCCACCTACTTCGTCAAGTGG
TTGGGTGGAAGCACTCTGGGCCTATCCTACGGTCTCACCATCAGTGAGGCATGCATCGCG
CCGGCCATGCCCAGCACCACGGCGAGGGCTGGAGGGGTGTTCCTTCCCATTGTCAAGTCG
CTGTCGCTATCGGCCGGCAGCAAGCCGAATGATCCATCAGCGAAGAAGCTGGGTGCCTAC
CTTGTGCAGTCTCAGCTGCAGGCATCTGGCAACTCCAGTGCTCTCTTTTTGACCGCTGCT
GCGCAGAATCTCCTGTGTTTGAAGTTAGCGGAGGAGGCTGGTGTCAAAATTGCAAGCCCT
TGGATATCATGGTTCAAGGTTGCAAGTTTGCCTGCCATCATTTCGCTTTTAGCAACACCT
TATTTGCTATACAAAATATTCCCTCCAGAAATAAAGGACACTCCTGATGCCCCTGCATTA
GCTGCTCAAAAACTGAATAAAATGGGCCCAGTGACGAAAAATGAATGGGTCATGGTTGCT
ACAATGATTCTTGCAGTCTCACTCTGGATATTTGGGGATGCTATTGGTGTGTCGAGTGTT
GTTGCTGCAATGATTGGGCTTTCAATTCTTCTTCTACTTGGAGTGATGAACTGGGATGAT
TGCTTGAATGAAAAGTCTGCGTGGGACACCTTAGCTTGGTTTGCTATTCTAGTGGGAATG
GCAGGGCAGCTCACTAACCTCGGGATTGTATCGTGGATGTCAAATTGTGTTGCAAAGGTT
CTTCAGTCTTTCTCATTGAGTTGGCCTGCAGCATTTGGTGTTCTTCAGGCCTCCTATTTC
TTTATTCACTATCTATTTGCAAGCCAAACTGCACATGTTGGAGCTCTATACTCGGCGTTT
CTTGCCATGCACCTAGCAGCTGGTGTTCCTGCTATACTCTCAGCACTTGCTCTGACGTAC
AATTCAAATCTCTTTGGAGCACTAACACATTATAGTAGTGGGCAGTCTGCGGTTTACTAT
GGAGCTGGATATGTTGACCTTCCTGATGTATTCAAGCTGGGGTTTACAGCAGCAGCGATT
AATGCTTTGATTTGGGGAGTAGTTGGTACATTTTGGTGGAAATTCTTGGGGCTTTATTGA
GGGTTTCTCCGGTGTAAGTTGATGAAAATTGTTCTTTAGTGCACCAGAAAGCCCTATGTG
GCTCACCATTCGGAGTGACCTCATCTTTCTTCGGAGGTGCTTGGTGAAATGTATAATAAG
AGGGCGATGTTCACCACTCAGAACTTTGAACATGCTACATTTGTAAAGTGATCTACCCAG
AAGGGTTCACATAGTTTTCAAGACTGCATTGTATCTCTGTTTCGCAGAACTAAATGCAAC
ACAGAAGGGTTCACATAGTTTTCAAGACTGCATTGCATCTCTATTTCGCAGAACTAAATG
CAATGTAGGGATGAGTTTAGATCCGGAAGCTCTACGCTTTCTTATATTGTGTATGCAATG
CCTTGTTTTTTGTGCCAACAATGGAGAGCTGTCGAGCAAGTACAATAAGTTACAGTCAGC
ATGCTGTAACGATTAAAATATTATATTTTTACTGAATTGGATGAGAGAGAAGAGGAGAGA
GAAGGAAAGCG

Homology of Contig U35_2666 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os08g37600.1	556	protein\|citrate transporter, putative, expressed
Brachypodium v1_2	Bradi3g38580.1	557
Arabidopsis v10	AT5G64290.1	563	\| Symbols: DCT, DIT2.1 \| dicarboxylate transport 2.1 \| chr5:25714495-25716642 REVERSE LENGTH=563