barSeed - Barley Seed Development Database

Probe CUST_8164_PI390587928

Source Contig U35_2670

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_8164_PI390587928	Hv_44K_v2	TAGCATTGATGGAATTCTACATGAAGAAAGCTGCGCAGGAAGAACGGAAGAGACCACCAA	530	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK250544.1	1700	2e-24	908 - 967	100	60 / 60	plus	ABC06271 ABC06272
MLOC	AK354858	1888	2e-24	935 - 994	100	60 / 60	plus	ABC06271 ABC06272
MLOC	AK249074.1	2802	2e-24	1936 - 1995	100	60 / 60	plus	ABC06271 ABC06272
MLOC	MLOC_63119.1	5358	2e-24	3904 - 3963	100	60 / 60	plus	ABC06271 ABC06272 ABC15209
MLOC	MLOC_63118.10	1153	2e-24	173 - 232	100	60 / 60	plus	ABC06271 ABC06272
MLOC	MLOC_63118.6	2324	2e-24	1646 - 1705	100	60 / 60	plus	ABC06271 ABC06272
MLOC	MLOC_63118.1	1782	2e-24	1248 - 1307	100	60 / 60	plus	ABC06271 ABC06272 ABC15209
MLOC	MLOC_63118.2	2885	2e-24	2259 - 2318	100	60 / 60	plus	ABC06271 ABC06272 ABC15209
MLOC	MLOC_63118.4	2169	2e-24	1401 - 1460	100	60 / 60	plus	ABC06271 ABC06272
MLOC	MLOC_63118.7	2081	2e-24	1311 - 1370	100	60 / 60	plus	ABC06271 ABC06272
MLOC	MLOC_63118.9	2030	2e-24	1142 - 1201	100	60 / 60	plus	ABC06271 ABC06272
MLOC	MLOC_63118.8	2699	2e-24	1978 - 2037	100	60 / 60	plus	ABC06271 ABC06272
MLOC	MLOC_63118.5	1837	2e-24	977 - 1036	100	60 / 60	plus	ABC06271 ABC06272
MLOC	MLOC_63118.3	2645	2e-24	1917 - 1976	100	60 / 60	plus	ABC06271 ABC06272 ABC15209
JLOC1	JLOC1_41333.6	2586	8e-25	1659 - 1718	100	60 / 60	plus
JLOC1	JLOC1_41333.5	2006	8e-25	987 - 1046	100	60 / 60	plus
JLOC1	JLOC1_41333.4	1904	8e-25	977 - 1036	100	60 / 60	plus
JLOC1	JLOC1_41333.3	2915	8e-25	1988 - 2047	100	60 / 60	plus
JLOC1	JLOC1_41333.2	2244	8e-25	1317 - 1376	100	60 / 60	plus
JLOC1	JLOC1_41333.1	2579	8e-25	1652 - 1711	100	60 / 60	plus
JLOC1	JLOC1_41334.1	4280	8e-25	310 - 369	100	60 / 60	minus
Harvest21	ABC32250	607	3e-25	528 - 587	100	60 / 60	plus
Harvest21	ABC06272	2007	3e-25	1224 - 1283	100	60 / 60	plus	ABC06272
Harvest35	U35_2670	1314	3e-25	531 - 590	100	60 / 60	plus

Contig Sequence (1314 bp)

>U35_2670 1314 Hv_44K_v2
GAACAAGATCCCTATTATGCCTGTCAAGTTTGGAGCTGAGGAGGACGATGATGATGATGT
TGCCGGTGTGGAGAGGGGGGATCATGCGAAGCGGCACAAGTCCATTGATGCTCCCTCAGC
CTCAGCACCACCAAATGATATGACAGTGAGGCAGGTTGCTGACAAATTAGCAAGCTTCGT
TGCCAAAAATGGGAGGCAGTTTGAGGATATCACACGGCAGAAGAATCCTGGAGATTCACC
ATTCAAGTTTCTATTTGATAAGAACTGTTCAGACTACAAATATTATGAGAATCGGCTTGC
TGAAGAGGAAAAGGTTCATGCTCAGACAAAGGATGCTCATGCTTCAAAAATTGTTAATTC
GAGCACTGCAAGCTCCATAGCACATACTGGTCCGCAAAGAAGCTCATTTGAACAAAGATC
TAACTATCAGACACCTGCTTCTGCTTTATATGGTGCATATGAAGGTAGTTCTTCCCAGGG
AAGCTCATCTAGCCATGGTGGTCAGAGCATGTCTGCACCCTCAGATCCAGTAGCATTGAT
GGAATTCTACATGAAGAAAGCTGCGCAGGAAGAACGGAAGAGACCACCAAGGCAGTCAAA
AGACGAAATGCCACCACCTCCATGTCTTGTTCAGGGTCCTCCTAACAAGGGACACCACAT
GGGGGACTTCATTCCTCAAGAAGAACTTGAGAAGTTCATGGCACGCTGTAACGATGCTGC
AGCACAAAAGGCTACCAAAGAAGCTGCGGAGAAGGCTAAGATTCAGGCCGACAATATTGG
GCACAAGCTTCTGTCTAAGATGGGCTGGAGGGAAGGTGAGGGTCTTGGCAGTGAGAGAAG
TGGCCGTGCAGATCCCATTATGGCTGGAGATGTGAAGCAGGATCACCTTGGTGTTGGTGC
TATCCAACCTGGTGAGGTGTCATCTGAAGATGACATCTACGAGCAATACAAGAAGCGAAT
GATGCTAGGCTACCGCCATAGGCCAAACCCACTGAACAACCCAAGGAAACAATACTATTG
ATACAAGGGGAGGTCAGCCAAGGGGAGGGGGAGACCAGAGAAGCCCAGAAGTTGATTTAT
TCAGCAAGTAACTTGGAACGCCACAGCCATGGGGCTTCCTGGGGTTATGCAGTAGCTTTG
CCGTTTTAGTGTTTGTTTTTGTCGCGTTAAGTACTATGAGTGTGTTCTATGGTGGTGTTT
TATGCCAAAGTTGATGTTTTGAACCGTGATGTATTTCTGCCTCTGTTGGTGGACAATGTG
ACTTTGTGATTATGCAACTTCTGCTGCGACTTCCTTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_2670 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g10930.1	432	4e-141	protein\|gamma response I protein, putative, expressed
Brachypodium v1_2	Bradi4g27117.1	421	4e-165
Arabidopsis v10	AT3G52120.1	443	5e-104	SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-patch domain-containing protein \| chr3:19329243-19331738 FORWARD LENGTH=443