barSeed - Barley Seed Development Database

Probe CUST_8163_PI390587928

Source Contig U35_2671

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_8163_PI390587928	Hv_44K_v2	TTAGCTTTTGTGTGACCACCATGGCGGTGTCTTGATTGGAGCTTAAAAGGATTGTGTAGC	357	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK249074.1	2802	2e-24	397 - 456	100	60 / 60	plus	ABC06271 ABC06272
MLOC	MLOC_63119.1	5358	2e-24	1770 - 1829	100	60 / 60	plus	ABC06271 ABC06272 ABC15209
MLOC	MLOC_63118.2	2885	2e-24	720 - 779	100	60 / 60	plus	ABC06271 ABC06272 ABC15209
MLOC	MLOC_63118.4	2169	2e-24	449 - 508	100	60 / 60	plus	ABC06271 ABC06272
MLOC	MLOC_63118.7	2081	2e-24	445 - 504	100	60 / 60	plus	ABC06271 ABC06272
MLOC	MLOC_63118.9	2030	2e-24	276 - 335	100	60 / 60	plus	ABC06271 ABC06272
MLOC	MLOC_63118.8	2699	2e-24	439 - 498	100	60 / 60	plus	ABC06271 ABC06272
JLOC1	JLOC1_41333.3	2915	8e-25	449 - 508	100	60 / 60	plus
JLOC1	JLOC1_41333.2	2244	8e-25	451 - 510	100	60 / 60	plus
JLOC1	JLOC1_41334.1	4280	8e-25	2444 - 2503	100	60 / 60	minus
Harvest21	ABC06272	2007	3e-25	358 - 417	100	60 / 60	plus	ABC06272
Harvest35	U35_2671	1185	3e-25	358 - 417	100	60 / 60	plus

Contig Sequence (1185 bp)

>U35_2671 1185 Hv_44K_v2
ATTCCCCACCCCATCCCCACCCATCGCACCAAATTCCTTTCTAGGGTTTGGTTTACCCGT
GCGGTGCCCCTCGATCAGGTAACTCTCCCGCCCCATCCGCCCTCCCGCCCCATCCGATCC
AGCGATTCGAGGCATGGCATCCCCATCGATGAATTTCACCCCATTTTTTGCACGCCAAGT
TTCGCCTAAATCGGGTCGGTCGTTGCTTGCCTGTAGAGTTAAATTTGTTGGAGTTTTGGA
GGAACTTTTCTGAGGGGGAGGCTAGATCCCCCTCCTTCCGGAAGTAAATAAATATGGATG
ATCGCGTGCGTCTAGGGTTTATTGTTTCGGTGGATTATATGTTCCGTAGACCTGTTGTTA
GCTTTTGTGTGACCACCATGGCGGTGTCTTGATTGGAGCTTAAAAGGATTGTGTAGCCAT
GGATAAGGGCCTCTTCGCCAACGACGGCTCCTTCATGGAGAGATTCAAGCAGATGCAGCA
GGAGATGCAGGACAAGGAGAAGCCCGTCGCCCCCACCGCCGCCGCTGGTGCTGGCGCTGT
CTCCTCTGCGCCGGCCAAGCCTGTCAACCCCAAGACGCCTCTTGTCATTGCGGCAAACAA
GAGGCCGCTCGAGGTCAAGAAGGCCGGCTCGGTCTTGTCGGGCGGGAAGCTGGCCTTTAG
CCTGAAGAAGAACAAGATCCCTATTATGCCTGTCAAGTTTGGAGCTGAGGAGGACGATGA
TGATGATGTTGCCGGTGTGGAGAGGGGGGATCATGCGAAGCGGCACAAGTCCATTGATGC
TCCCTCAGCTGCTGCCCCAGCTAGGGTTGTTGCCTCAGCACCACCAAATGATATGACAGT
GAGGCAGGTTGCTGACAAATTAGCAAGCTTCGTTGCCAAAAATGGGAGGCAGTTTGAGGA
TATCACACGGCAGAAGAATCCTGGAGATTCACCATTCAAGTTTCTATTTGATAAGAACTG
TTCAGACTACAAATATTATGAGAATCGGCTTGCTGAAGAGGAAAAGGTTCATGCTCAGAC
AAAGGATGCTCATGCTTCAAAAATTGTTAATTCGAGCACTGCAAGCTCCATAGCACATAC
TGGTCCGCAAAGAAGCTCATTTGAACAAAGATCTAACTATCAGACACCTGCTTCTGCTTT
ATATGGTGCATATGAAGGTAGTTCTTCCCAGGGAAGCTCATCTAG

Homology of Contig U35_2671 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi4g27117.1	421	2e-93
Arabidopsis v10	None