barSeed - Barley Seed Development Database

Probe CUST_8160_PI390587928

Source Contig U35_2674

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_8160_PI390587928	Hv_44K_v2	CTTCCTAAAACCTGCCGATTCTATTCATTATGAGCATGTGAATGTTGTCCATCCAAAAAA	1256	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_56623.1	1374	9e-22	20 - 74	100	55 / 55	minus	ABC07769
JLOC1	JLOC1_36646.1	1482	5e-22	1304 - 1358	100	55 / 55	plus
Harvest21	ABC07769	1255	3e-25	1185 - 1244	100	60 / 60	plus	ABC07769
Harvest35	U35_2674	1327	3e-25	1257 - 1316	100	60 / 60	plus

Contig Sequence (1327 bp)

>U35_2674 1327 Hv_44K_v2
GTTTTCTCCGCCTAATTCCTGCGTGCCAGCACACAGCTGGGCAGCTCACACGACTCCAGC
CCCCAAACCCAACGGCCCCGCACCAACCCTCCTCCCCCTCCTCGACCCATCCGCCGCCCT
CCTCGCCTCCACCGGAAGAGCTGCTCCCCACGCAACCGGGCGGATCCCGCTAGGCGTAGG
CGGGGATCCAGCAGCCGCCATGGCGGCGAGCGACGTGCCCATGAGCCCCGAGCTCGAGCA
GATCGACGGCGAGATCCAGGACATCTTCCGCGCCCTACAAAATGGGTTCCAGAAGATTGA
CAAGATCAAGGACTCCAACAGGCAGTCCAAGCAGCTGGAAGAACTCACTGGGAAGATGAG
GGAGTGCAAGCGCTTAATCAAAGAATTTGATCGTGTACTCAAGGATGAGGAGAAAAGGAA
TACCTCCGAGGTCAACAAACAGCTAAATGACAAGAAGCAATTTATGATCAAGGAGTTGAA
TTCATACGTCACCTTGAGGAAGACGTACCAAAGTAGCCTTGGTAATAAGAGGATTGAACT
ATTTGATGCTGGTAATGACCAGGTAGCTGAAGATAACGTTCAAATGGCATCAGAAATGTC
AAATCAACAACTGATTGATTCTGGAGTGAGACAAATGGACCAAACAGACCAAGCTATTGA
GCGTTCGAAAATGGTTGTTGCACAAACTGTTGAAGTTGGAGCTCAAACTGCTACAACTCT
AACACAGCAAACTGACCAAATGAAGAGAATTGGCAATGAGCTAGATTCTGTTCACTTCTC
ATTGAAGAAGGCTAGTCAAATGGTGAAAGAGATTGGTCGTCAGGTTGCAACTGACAAATG
CATCATGGCATTTCTATTCTTGATAGTTTGTGGTGTGATTGCCATCATTGTTGTCAAGAT
CGTCAACCCGCATAACAAAAGCATACCAGACATCCCGGGACTGGCACCTCCTGCACCTCC
TGCGCAGAACCGGAAACTGCTTTCCATAGATGCTTTCCGAATGCTCTGAACATTCGGAAA
TGGAAGTCTCGTGCAGTACAGGTCTCTCTCGCGGAAGCCAAAACACACGATGTCAACTGT
TCCATTGGTGCTTGCTTGTACATTATCCCCGTATGTAATTTTCTTTGATTGCTTTTAGCT
TCGGATTGTTAGTAGCACTTCGGTCGTGTGGTGTTTAAATTGCCTGGCCTTCTTGGTTGT
GTACATGCGTTAGTGGTGACCAGTGAGAGTAATGCGATTATTCTTTGCTCGTATACCTTC
CTAAAACCTGCCGATTCTATTCATTATGAGCATGTGAATGTTGTCCATCCAAAAAAAAAA
AAAAAAA

Homology of Contig U35_2674 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g44350.1	267	4e-147	protein\|sec20 domain containing protein, expressed
Brachypodium v1_2	Bradi1g20080.1	268	2e-152
Arabidopsis v10	AT3G17440.1	269	1e-118	\| Symbols: NPSN13, ATNPSN13 \| novel plant snare 13 \| chr3:5969909-5972290 REVERSE LENGTH=269