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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_8156_PI390587928Hv_44K_v2CTTGCTGTATATCTATGGATATAAGTAGATTATGGTCAGCTCAAGAGGGAAAGGAAAAAA2652GeneList: green
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 1.1231.3151.2481.1050.4350.482
Raw 522.477958.309789.2871104.981146.619182.778



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCAK36782327122e-242629 - 268810060 / 60plus ABC06368 ABC49652
Harvest35U35_267827533e-252653 - 271210060 / 60plus



Contig Sequence (2753 bp)

>U35_2678 2753 Hv_44K_v2
GCAAGAGGGCGCCTCCCTCCCGATCGAACGACCAGAGAGAGGCCCTTTTTCCCGAGCGCG
ACAGCTAGGGTTCCTAGTCGCCGCCGGCCCGCCGCCGCGGCGTGCCCCGCCGGCCGCCGC
GCCGCCGCCCCGCCGCCGGAACAGGAGCCCAGCAGCGCCTCCCTCTCCCGCCCGGAGCTA
CGCCGGCGACCAGTCCATAGGCAGGAGATTATGGAGTGTAACTCTTCAGATGTGCGAATG
TCACACTGCGCTGAGGGTTCCGAGACTACGATAGAGATCAAGATCAAGACTTTGGATTCC
CAGACGTACAATTTGCGCGTGAATAAATGCGTGCCAATTCCTCTGCTAAAGGACAAGATA
GCTACTGTAACTGGAATATTGTCTGAACAACAACGTCTGATTTGTCGTGGGAGAGTCTTG
AAGGATGATGAACTTCTCTCTGCTTATCATGTTGAAGATGGCCATACATTGCATCTTGTT
GTTAGACAACCAGGCCAGCCAGCTGCATCAGGAAGTGCAGGAAATGAAGCTAATGTATCA
AATTCAACTCGTCGTCATGGTCGCACAGTTCGCAGTATTGTGCTTGAGGCTGTAGATTTG
GAGCAGGGGAGTGAATTCTCTAGCCTTGCCCAGATTCTCCAAAGCTTGTTGACCAGCCCA
CAAGTTCAGGGTGGATCAGCACCTTCTGATACCAGACCATCAGAACCTATGCAATCTTCA
TTCCCAAATGATGTCAGGGTCGAACTTGATCAACAGCAGGCTTCTCTGCATTTCCCTGAA
GCGGCAGTTGGATCATCACTGCCAAATGTCATCCCTGATTCCGTGACTACAATTTCTCAG
TACATTAACTTTATGAGGGACTCGTTTAGGAGGGAAGGCTTCAATGGAAATGCACAAACG
GTGCGTGACATTGACCCTGGAACCGCAGGAAGTGTTCATGTTGGTGGTACCCAAAGCCAG
GAAAGCCAGCCTGGTTCAACTTCTGCACATCATGTACTTCCTACTGCAGCATTGCTAGCT
GAAACCATGCAGTCTACTAGACAACTTCTTGTTGACCTGGCTGGAGAATTGCTATCTCAA
CTCTCGACGCAACTGGGAGATCTTGGGAATGTAAGTGACTCCCCAACTCGGAGGAACCTT
CAACAGAGTGCAATGAGACAAGGTGTTCTCCTCCAGAATCTTGGTTCATTACTTCTAGAA
CTTGGTCGCACCACAATGACTCTTCGTATCAATCCCACACCTTCAGAAGCGGTTGTAAAT
TCTGGACCGGCTGTTTTTATATCTCCATCTGGGCCAAACCCTCTAATGGTTCCTCCTGTT
CCGTTTTTTCCAGGACCAAGATCTGTGCAAATGGGTCAGATGTTTTCTAGTCTTGGTTCG
CAAGGCTCTGTTCTACATCCAAGAGATGCTGATATCCATGTCCGTACAAGTGGGTCTGTG
CCTGTAGCCAGTACTAACCCAAGTGAATCGGCTGGGGCACAGCAAGCACAAGAACATACA
GATAGAACTGGCAATGCTTCACATTCAAACGCCAGAGAAGCATTTGCACGAGTTGCAGGT
GGTGCTCCTTTTGCTGTTGGGTCTGGAGTTAGACTGTTGCCACTTAGGACAGTTGGTGCT
GTGCCTGCTGGCATCAGTCGCTCTCCATCGGGTTCTTCTAGTGGAGGAGTTGGTGTTATC
TTTCCAATGATCACCAGAGTTCATCAAAGAGTAAATTCTAATGGTAGCGGTGCACGAAAT
GGTCAAACTCCAAATGAACCTCATAGTGACACCCATGCTAATCTGCAACCGAATCCTCAG
CCACCACGTGAAGCAGGTAATCTGGGGCATTCGATCGATGTCAATGCGGGGAACAGTTCT
CAGGCTTCCCATGGTCAGCAGAATGGTCAGGGTCCTTTATCCCAGTTGATGGACAGTCTC
CAGTGGATTGGCTCACTGTTTTCTGGAGAAACCCCCCCAGCAAATGGTACAAGTCATCAT
GCACCAGCGGCTTCTGCTGAGCCAGTAGATGCTAGAAACCATGCAGTACCTGAAGTGTCA
GTGGCCAGCGACGAGGGGATACGCTTTGCTAATTTGGTCAGGCAAATTATGCCACATATC
TCCAATGTTGAAAACCAGCCTCAAAGCACCCCAGCAGACACCAGCAGTACTCCTTCACAG
GCTGCTGTGCCCGAGAGCGCCAACGGTTCAAGGGATGGGCCAAGTGATTCCAGGAATTCA
CGTCAACATAGCCGTGACCCTGTTGACGGGCCTAATTCTAAAAGGCAAAGAATGAGTGAG
TGATTCAGGTGGGATTGTTATTGTTGGGTGGGCGCTGCTTTTGCATTCTGTGAGCTGAGA
AAATTTTCCAGTTGCTGCTACACCAGAGAATTAAGGATGAGTCATAATCTTATTGAGACA
AGTGGAATTGTTTCGAGTGTATAGTCGAGCCTTGGGATATTAGGCTGTTCATAACCTGTG
CTATTTTGCACAGCCGCTCCTGTAATCCTTCTTTACTTTTTCGAATTCGATGAAGCATAA
AATGTTCTTGCAAAGCGCAAACTGTTGTCCATCTCCAATACGTGCAAGTCAATTATGTTT
GGGGTGGAAATATCCGTGCGATTAATCAAGCATCGGTTGGTGCTTGTCGCAGTAGTCATT
TCTCTGTCACTTCTTGCTGTATATCTATGGATATAAGTAGATTATGGTCAGCTCAAGAGG
GAAAGGAAAAAAAACATGTAGCATGTTGCTGTTGGTAAAAAAAAAAAAAAAAA



Homology of Contig U35_2678 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7LOC_Os08g19830.16830.0protein|ubiquitin family protein, putative, expressed
Brachypodium v1_2Bradi3g19947.16940.0
Arabidopsis v10AT5G25270.16581e-85Ubiquitin-like superfamily protein | chr5:8757577-8762002 REVERSE LENGTH=658