barSeed - Barley Seed Development Database

Probe CUST_8145_PI390587928

Source Contig U35_2689

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_8145_PI390587928	Hv_44K_v2	TTGATGTGTGTAACCTGCTCGGTAATTTATGATGAAATAAGGCTTTTGCTTGCCAAAAAA	1456	GeneList: midnightblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.058	0.065	0.444	1.782	1.983	2.807
Raw	16.426	28.486	180.390	1088.487	432.583	669.214

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_70077.5	2063	9e-22	1858 - 1912	100	55 / 55	plus	ABC07501
MLOC	MLOC_70077.3	1901	9e-22	1696 - 1750	100	55 / 55	plus	ABC07501
MLOC	MLOC_70077.2	1639	9e-22	1584 - 1638	100	55 / 55	plus	ABC07501
MLOC	AK364111	1511	3e-21	1458 - 1511	100	54 / 54	plus	ABC07501
JLOC1	JLOC1_46485.2	1446	5e-22	1150 - 1204	100	55 / 55	plus
JLOC1	JLOC1_46485.1	1897	5e-22	1601 - 1655	100	55 / 55	plus
Harvest21	ABC07502	540	3e-25	470 - 529	100	60 / 60	plus
Harvest35	U35_2689	1529	3e-25	1457 - 1516	100	60 / 60	plus

Contig Sequence (1529 bp)

>U35_2689 1529 Hv_44K_v2
AAGCCGATCCGCCGCCATCGCCACTCGCAGCATCACACGCAAAAGGCTAGAAAGAAGTAG
TTTTAGCCCGTGATCACCTTAATCCCGAGGCACAGCCATCAGCGTCGTGTTCACGAGGGA
CCTGCCGCCATTGCTGCAACTTGGAGCTTCTTCTTCCCGTCGTGAGTGATATAAAGGAGC
TCGACACGATGCAGAGCGGCCAGCAGCAAGCGAGGAGGAAGAACGCGCAGGTGCTGGACG
GGTCGGACATCCGGGAGCTGGTGGAGAACAAGGAGGCGTTCGCGAAGTTCGTGGAGAACA
AGTTCCGGCACCTTGACGCCGACGGCGACGGGAGGTTGTCGTTGAAGGAGCTCCAGCCCG
CCGTCGCGGACATCGGCGCCGCCATCGGGCTGCCGGCGAGGGGGTCGTCGGCGCAGGCGG
ACCACATCTACTCCGAGGTTCAAAATGAGTTCACCCACGGGAAGCAAGATTCGGTGAGCA
AGCCGGAGTTCCAGCACGTGCTGTCCGACATACTCCTCGGCATGGCGGCCGGGCTCAAGA
GGGACCCAATCATGATCCTCAGGGTGGACGGGGAAGACCTGAACGAGTTTGTTGAGAGCG
CGGCGTACGAAGCAGAGGCAGTCGCCATATTCTCTCAAATCGAGTCGGGAAATTCGTCGT
TGCGACAATGTTTGCCCGCCGCTCTTCGACAGCTCACGGTCGATCACGGCATGCCACCGG
CTTCGGACTCTCTGGTTATGGAGAAGATCATAGTACCTGCATTGCAGGAACTGCCAGCGG
ACCAGCTTGACCAGCCAGCATCGCAAGATGTCTTCTTCCAAGAGTTCAAGAAGTATTTGG
GAACGATCGCCCGGCGACTCCAGGAGTGCCCGATAATTGTGGCGCACACGGAGAACACCT
TTGATGGGGCTGGCATTAGGAAGATACTGTCGAACAAGTTCGAGTTCGACAAGCTGCTGG
ATTCTGTCTGGGAAGATGTCCCCAAGGAACACAAAGATAGAACATCAAAGAAGTACCTTC
GCGTTGCGTTTGACAAGATGGCCGCGTCAGTAAATCTACCACCATATGGAGCTGTTAATC
AGGTGGATGCTGTGGTGAACGAGGCGTTCAAGATGGCGAACGCCGACGACGGGAAGGCGG
TGGACGAGGCCGAGTTCAAGAAGCTGCTGACCGAGATCCTAGGGGCGGTGATGCTTCAGT
TAGACGGCAACGCGATCGCGGTCTCCACCAACACCGTCCTCCACGAGCCCATGTCCACTT
CGTCGACCTTGTTGTCGCCGTCGCCGTCGTCGCCCACGGTGTCATCGCCGAGCGAGTAGA
CACATGTTCGGTAGAGTAACAGTTTCCGCTGACGCTGTAGCTGCGGTCGACGCCGGGATC
TACCTGATTACACTGCAATAACGTGACGTTCTTGCCTGAACGTCAACCTGAGACGGGGGT
GCTTATATGCATACTGTTGATGTGTGTAACCTGCTCGGTAATTTATGATGAAATAAGGCT
TTTGCTTGCCAAAAAAAAAAAAAAAAAAA

Homology of Contig U35_2689 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os10g09850.1	387	1e-177	protein\|EF hand family protein, putative, expressed
Brachypodium v1_2	Bradi3g22635.1	387	0.0
Arabidopsis v10	AT4G38810.2	375	1e-129	Calcium-binding EF-hand family protein \| chr4:18115607-18118860 REVERSE LENGTH=375