barSeed - Barley Seed Development Database

Probe CUST_8144_PI390587928

Source Contig U35_2690

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_8144_PI390587928	Hv_44K_v2	GGAAGGTTCCCAATCCCTTATGCTCTCTACTTGATCTTCATCTCCATATTGGCTGGATTC	1267	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.597	1.690	1.242	0.518	0.343	0.330
Raw	33.183	52.039	34.075	22.056	3.473	4.295

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK369448	2049	2e-24	1305 - 1364	100	60 / 60	plus	ABC10551 ABC10552 ABC36509
MLOC	MLOC_37044.1	1711	2e-24	724 - 783	100	60 / 60	minus	ABC10551 ABC10552 ABC36509
JLOC1	JLOC1_23931.2	2078	8e-25	935 - 994	100	60 / 60	plus
JLOC1	JLOC1_23931.1	2385	8e-25	930 - 989	100	60 / 60	plus
Harvest21	ABC10550	1367	3e-25	1268 - 1327	100	60 / 60	plus
Harvest35	U35_2690	2058	3e-25	1268 - 1327	100	60 / 60	plus

Contig Sequence (2058 bp)

>U35_2690 2058 Hv_44K_v2
CTGCTACCCGCAGTCGCGCACCGATCTGCTTCGCCGCGCCAGTCTAGCCGTCGCCGCTCC
CTCCCTCTCTCTGCCTGCCTGCATGGCGTCCACGCCGGCGGGCATCTACGGCAGGCTGAA
CAGGACGAGCACGCGGGCCTTCCTCGCATACTTCGCCGGCGGAGCCGCCTGCGCCGCCGC
CCTCGCCTGCTTCGTCGTCGTCGCCTCCACCGCCGCGCCCAATGGCGCGCCCCGCCTCTC
CTCCCGCTCCGCTCGCGTCTGGCCCGACCTCGAGTTCAACTGGCGGCTCGTGGTGGCCAC
CGTCGTCGGCTTCCTCGGCTCCGCGTTCGGCACCGTCGGCGGCGTCGGCGGCGGCGGCAT
CTTCGTGCCCCTCCTCAACCTCGTCCTCGGCTTCGACACCAAGTCCGCCGCCGCGCTCTC
CAAATGCATGATCATGGGGGCGTCGGCGTCGTCGGTCTGGTACAACCTGCAGGTGTCGCA
CCCGACCAAGGAGGCGCCGGTGCTCGACTACAAGCTCGCGCTGCTCTTCCAGCCCATGCT
CATGCTCGGGATCACCATCGGCGTCGAGCTCAGCGTCGTCTTCCCCTACTGGCTCATCAC
CGTCCTCATCATCATCCTGTTCGTAGGAACCTCCTCGCGGTCCTTCTACAAAGGCATCCT
CATGTGGAGGGAGGAGACAAGGATCCTGATGGAGACACGGGAGCGAGAAACCCAGTCCAA
GTCTTCTGGTGCCAGTGCCACCAACGATGTGGTTCTTGACCCGAGTTATGCAGAGCCTCT
CCTGCCCCAGTCTAAGCCCACGCAGAAGTCTGGCCTGGAGACTTTGATGTTCAACTTGAG
GTGGAAGCATATCCTAGTGCTACTGGCTGTTTGGTCATCTTTCTTGGTGCTGCAGATACT
GAAGAATAACTCCAAAACATGCAGCACTTTCTACTGGGTGATCAATATTTTCCAGATCCC
AGCTGCAGTAAGTGTATTCGTGTGGAAAGCGGTTCAGCTGTGCAGGGAGAGCCGTGCTAG
ACGCATGAATGGTAACCTGGAGTGTGTCTGTGAGGCCAATATCGAGTGGTCACCAACACA
GCTCATCTTCTGCGCCTTCTGCGGCCTCCTGGGCGGTACAGTTGGTGGTCTTCTCGGCTC
TGGAGGCGGTTTCATCCTCGGCCCACTACTTCTTGAGTTAGGGTGCATCCCTCAGGTTGC
AAGTGCCACAGCAACGTTTGTGATGATGTTCTCCTCGTCTCTGTCCGTGGTCGAATTCTA
CTTTCTAGGAAGGTTCCCAATCCCTTATGCTCTCTACTTGATCTTCATCTCCATATTGGC
TGGATTCTGGGGCCAGTGCTTGGTCCGGAAGATCGTGCTTGTGCTCAAGAGAGCGTCGCT
GATCGTCTTCATCCTCTCCTCCGTCATCTTCGCCAGTGCTCTTACCATGGGTGTTGTCGG
GACGGAGAAGAGCATCTCGATGATCAACAAGCACGAATACATGGGGTTCCTCAGCTTCTG
CGGGTAAACCAACCAAGCAGACGACCACAACATCGGGGGAGAGAACCCTGGCCAATACCT
AATTGACCTCACCTCTCCCCACTCCGTTCAAGTTCACTTCAGTTCAAGGATACAAAAATA
AAGAAGCCGCGGCGTGTGCCCCTCGCCTTGTTAGCTCCTCGCTAACCTGCAAGCACACGC
CCGGCGAAGGAACCGTAGCAGCAGCAGTAGTAGTGGTAGCATCATTCATGCGCGCGTTAG
CTCCTGGCTGGCTAACCCGCAATTGGTCTTGTGGCGTCTGTGTCGTGTCGTGTGTGTGCC
GGTTGTTTTTTGTCATGGGCGGGTTAGCTCGGTCCTGGCTGGCCTGCAGGGAAGAATTCG
TCGCACGGGGTTACGTCGATTCATTCGCGTGATGGTTAGCTAGCTTACCGTGCAAGCGTG
GATTTGTATTGGGTGCTGTAAATATATCAGCCTGCCAGCCAAATTGGCTGCTTGCTGCAC
TGTCAGTATAGCTTGCTGTTCATCAAAAAAAAAAAAAAAAAGCTGCCTGCAATTCCAGTG
GCCTAAAAAAAAAAAAAA

Homology of Contig U35_2690 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g51650.1	476	0.0	protein\|membrane protein, putative, expressed
Brachypodium v1_2	Bradi1g10110.1	480	0.0
Arabidopsis v10	AT2G36630.1	459	4e-158	Sulfite exporter TauE/SafE family protein \| chr2:15352767-15355050 REVERSE LENGTH=459