- Probe CUST_8143_PI390587928
- Source Contig U35_2691
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_8143_PI390587928 | Hv_44K_v2 | AACGTGGATTTGTATTGGGTGCTGTAAATATATCAGCCTGCCAGCCAAATTGGCTGCTTG | 633 | GeneList: brown MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 2.362 | 3.351 | 1.390 | 0.667 | 0.337 | 0.364 |
| Raw | 278.520 | 621.384 | 221.269 | 167.762 | 29.664 | 35.343 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK369448 | 2049 | 2e-24 | 1960 - 2019 | 100 | 60 / 60 | plus | ABC10551 ABC10552 ABC36509 |
| MLOC | MLOC_37044.1 | 1711 | 2e-24 | 69 - 128 | 100 | 60 / 60 | minus | ABC10551 ABC10552 ABC36509 |
| JLOC1 | JLOC1_23931.2 | 2078 | 8e-25 | 1590 - 1649 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_23931.1 | 2385 | 8e-25 | 1897 - 1956 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC10552 | 724 | 3e-25 | 31 - 90 | 100 | 60 / 60 | minus | ABC10552 |
| Harvest21 | ABC10551 | 569 | 3e-25 | 102 - 161 | 100 | 60 / 60 | minus | ABC10551 |
| Harvest21 | ABC36509 | 348 | 4e-24 | 244 - 301 | 100 | 58 / 58 | plus | ABC36509 |
| Harvest35 | U35_2691 | 794 | 3e-25 | 634 - 693 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_2690 | 2058 | 4e-24 | 1917 - 1974 | 100 | 58 / 58 | plus |
Contig Sequence (794 bp)
>U35_2691 794 Hv_44K_v2 GACTTGATCTTCATCTCCATATTGGCTGGATTCTGGGGCCAGTGCTTGGTCCGGAAGATC GTGCTTGTGCTCAAGAGAGCGTCGCTGATCGTCTTCATCCTCTCCTCCGTCATCTTCGCC AGTGCTCTTACCATGGGTGTTGTCGGGACGGAGAAGAGCATCTCGATGATCAACAAGCAC GAATACATGGGGTTCCTCAGCTTCTGCGGGTAAACCAACCAAGCAGACGACCACAACATC GGGGGAGAGAACCCAGGCCAATACCTAATTGACCTCACCTCTCCCCACTCCGTTCAAGTT CACTTCAGTTCAAGGATACAAAAATAAAGAAGCCGCGGCGTGTGCCCCTCGCCTTGTTAG CTCCTCGCTAACCTGCAAGCACACGCCCGGCGAAGGAACCGTAGCAGTAGTAGTAGTGGT AGCATCATTCATGCGCGCGTTAGCTCCTGGCTGGCTAGCCCGCAATTGGTCTTGTGGCGT CTGTGTCGTGTCGTGTGTGTGCCGGATGTTTTTTGTCATGGGCGGGTTAGCTCGGTCCTG GCTGGCCTGCCGGGAAGAATTCGTCGCACGGGTTACGTCGATTCATTCGCGTGATGGTTA GCTAGCTCCATTTGCTAGCTAGCTTACCGTGCAAACGTGGATTTGTATTGGGTGCTGTAA ATATATCAGCCTGCCAGCCAAATTGGCTGCTTGCTGCACTGTCAGTATAGCTTGCTGTTC ATCAAAAAAAAAAAAAAAAAATTCCCAGTGGTTTAATTATGGAGCAATTTTCGATGCAAA AAAAAAAAAAAAAA
Homology of Contig U35_2691 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |