barSeed - Barley Seed Development Database

Probe CUST_8138_PI390587928

Source Contig U35_2697

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_8138_PI390587928	Hv_44K_v2	CTTGATTTGTGTGTGTGAAACAGCTAAGTTCAGTTATTATGAAATGCTATGAAACGTTGC	2262	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK363365	3646	2e-24	3554 - 3613	100	60 / 60	plus	ABC06775
MLOC	MLOC_10131.3	1403	2e-24	1113 - 1172	100	60 / 60	plus	ABC06775
JLOC1	JLOC1_6603.1	3486	8e-25	3161 - 3220	100	60 / 60	plus
Harvest21	ABC06775	2389	3e-25	2263 - 2322	100	60 / 60	plus	ABC06775
Harvest35	U35_2697	2389	3e-25	2263 - 2322	100	60 / 60	plus

Contig Sequence (2389 bp)

>U35_2697 2389 Hv_44K_v2
GGTCCTTGAGTCCTTGGCCAGTATCAAAGTTGCTGCCTTTGACAAGACTGGTACAATTAC
TAGAGGGGAGTTCTCTGTGGAGGAGTTTCAGACAGTTGGTGAGCGTGTTTCGAAGCAACA
ACTTCTATACTGGGTTTCAAGCATCGAGAGCAGGTCGAGCCACCCAATGGCAGCTGCTCT
TGTTGGTTATGCTCAATCAAACTCCGTGGAGCCAAAATCAGAAAATGTTGCTGAATTTCA
AATGTATCCTGGTGAGGGGATTTACGGTGAAATTGGTGGAGAGGGCGTATATGTTGGGAA
CAAAAGGATCTTGGCAAGGGCATCGTGTCAAATAGTTCCAGACATAGTAGAACACATGAA
AGGAGTTACCATCGGATACGTGGCCTGCAACAAGGAATTGATTGGGGTATTCAGCCTCTC
GGATTCATGCCGAACTGGATCAGCCGAGGCCATCAAGGAGTTGAGATCACTGGGCATCAA
GTCAGTGATGCTTACTGGCGATAGTACTGCTGCTGCCACACATGCACAGAACCAGCTGGG
TAACATTCTAGCTGAGGTTCATGCTGAACTTCTACCAGAAGACAAAGTGAGAATTGTTGA
TGAACTGAAGGCAAGAGATGGCCCTACACTGATGATTGGCGATGGCATGAATGATGCCCC
AGCACTGGCCAAGGCTGATGTTGGAGTTTCCATGGGCGTGTCCGGTTCAGCCGTCGCAAT
GGAGACGAGTCACATTACTCTGATGTCGAATGACATCCGCAGGATCCCAAAGGCTATCAA
GCTGGCCAGGAGGACTCACCGGACCATCGTTGTGAACATTGTCTTCTCGGTGACCACGAA
GCTTGCAATTGTTGCACTTGCATTTGCCGGTCATCCGCTTATTTGGGCAGCAGTCCTTGC
TGATGTTGGTACATGCTTGTTGGTGATCATGTACAGCATGCTGCTACTGAGAGAGAAAGG
CAGTGGAAAGGTGGCGAAGAAATGCTGTGCTTCTTCTCACTCAAAGAAGCATGGGCACCG
AACTACCCACCACTGCTCAGATGGTCATCACCATGAGAATGTATCAACAGGCGGTTGCGT
GGATTCGTCTGCAGGTAAGCATTCTTGCCATGATCATCACCATGAGCATGACCACCACAA
AGAGCCGAGCAACCTGCATTCCGTAGACAAGCATGGCTGCCATGATCATGGTCATGTTCA
TAGCCACTGCAAAGAGCCGAGCAGCCAGATGGTCACAAGCAAGGATGTTGCCCATGGACA
TGGCCATACCCACAACATCTGCAACCCTCACCCTGCTGCAAACAAGCATGATTGCCATGA
CCACGAACATAGCCACCACCAAGAACCCAATAGTTCACATTCTGCCGATGAGCATGATTG
CCATGGTCACAAGCACTGTGAAGAACCAACCAGCTTGCTTTGTGCCACTGAGCATGCTTG
CCATGACCATGACCAGAACCATGAGCATCACTGCTGTGATGAAGAGAAAACAGTCCATGT
TGCAGATACGCATTCCTGCCACGACCATAAGCATGAGCAGGGTGCAGCTGATTCAGTTCC
AGAGCTATCGATATGGATCGAGGGTCAATCCCCTGATCACCGTGAGCAGGAAATTCAATG
CAGCACAGAACACAAAGAGGAAGCGTGTGGGCATCACCTGAAGGTCAAGGATCAGGTCCC
AGCTAAGACAGATTGCAGCAGGGGGGGCTGTCACGGTACCGCGAGCAGCAAAACCTGCGA
AAGCAAAGGTAAAAATGTTTGTTCAAGCTGGCCGGTTGGTCGCACCGGAGTTGTCCGCCG
GTGTTGCAGGACTAGAACGCACAGCTGCTGCAGCCAAAGCATGTTGAAACTACCTGAGAT
AATAGTAGGATGAAGAGTATATATGGTATATGTCGGTAACCAAAGTGAGCAGCTTTATAA
CTATCTAAAAGGAGTCAGCAACTGTTGAAGGCGCCTCATCGGTGTATGTAGCTGGATTGC
CATAACTGATAAGAGGTACTATTTGTGCTGGTTATGCTGCTGAAGAAATGGGGTGGAGGC
CTGAATTTTGATGAAGCAGGTGTCTGTCTGAATGGATAAGCTGCTCTTGCTGTCTTCTCC
CTGTTGGATTTTGCATCTTTTCAAAGAATTTGAGAAGCCGCAAAGGGAGATACGTTCATA
TTATCAATGTGCTCCAACAATAATAATTGAAAGAAGCTGGTCTAGATCAGTTTATAGCTT
CTTATTAGGTTATCTTTATTAGAGTACCGAGTTGTAGCCATCCTTGATTTGTGTGTGTGA
AACAGCTAAGTTCAGTTATTATGAAATGCTATGAAACGTTGCATAGAATTATGATATGAT
GTTGGTCAAGTTATGAAATGATGTTTCCTTTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_2697 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g12900.1	1005	2e-112	protein\|cadmium/zinc-transporting ATPase, putative, expressed
Brachypodium v1_2	Bradi1g34140.1	1040	0.0
Arabidopsis v10	AT4G30110.1	951	1e-112	\| Symbols: HMA2, ATHMA2 \| heavy metal atpase 2 \| chr4:14720253-14724577 REVERSE LENGTH=951