barSeed - Barley Seed Development Database

Probe CUST_8132_PI390587928

Source Contig U35_15220

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_8132_PI390587928	Hv_44K_v2	CGCATGTCCTTGTCTACTGTCATTTACCATTGCCATCTGCTGTTAAATTATTATATAACA	1642	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_57846.1	863	6e-24	501 - 559	100	59 / 59	minus	ABC03031
JLOC1	JLOC1_37566.1	1838	3e-24	1347 - 1405	100	59 / 59	plus
Harvest21	ABC03032	565	1e-24	471 - 529	100	59 / 59	plus
Harvest21	ABC03031	1715	1e-24	1626 - 1684	100	59 / 59	plus	ABC03031
Harvest35	U35_15220	1735	3e-25	1643 - 1702	100	60 / 60	plus

Contig Sequence (1735 bp)

>U35_15220 1735 Hv_44K_v2
GCGGACGAATCTCAGCCCTGAAATCCCCATCCCCTCCCCCGCACCCGTCCGTCTCCCTCC
CCTCTCTCCCTAGGGTTCGGGCCTCTCCTCCCCTCTCCTCTCGCCATGATGCAGCCACCG
CCGCCGTCGCAGCCGCAGCCGGGCATGGGCGCCCCCATGCCGCCGCAGGGCGCGGGAGGG
CAGCCGCCGCACTGGGGCGCGATCCCGCCGCCGATGCCGCACTACGCGCAGCCGCCCCCG
CAGCAGCAGCCGCCGCCCCAGGCCATGTGGGGCCAGCCGCCGCCCCAGGCCGCGCCCTAC
GGCCAGGTGCCCGCCCCGCAGCAGTACTACGCCGCGCCGCAGGCCCCCGCCGCCCCCGCC
GCCTCGGACGAGGTCAGGACGCTCTGGATCGGGGACCTCCAGTACTGGATGGACGAGAAC
TACATCTACAGCTGCTTCGCCAACACCGGGGAGTTCCAATCTGTGAAGCTTATCCGCGAC
AAGCAGACTGGGCAGCTTCAGGGTTATGGCTTTGTCGAGTTTGCAAGCCATGCAGCTGCT
GAGCGAGTTCTTCAGACATTCAATGGACAAATGATGCCAAATGTTGAGTTGGCATACAGA
CTGAACTGGGCCAGTGCTGGCGAAAAGCGTGATGATACCCCAGACTATACAATTTTTGTT
GGGGACTTGGCAGCTGATGTTACAGACTACATGTTACAGGAGACATTCAGGGTCCATTAC
CCTTCAGTGAAGGGCGCAAAAGTTGTGACTGACAAGATGACAATGCGTTCAAAGGGTTAT
GGGTTTGTCAAGTTTGGTGATCCCACAGAGCAAGCTCGTGCCATGACTGAGATGAATGGA
ATGCCCTGTTCTTCCAGACCTATGCGCATTGGTCCAGCAGCAAATAGGAAGACAACAGGG
GTTCAGGAGAGAGTACCAATTCCAAATACAAATACTCAAGGAGCTCAGTCTGACAATGAT
CCTAACAATACCACCATATTTGTTGGCGGCCTTGACCCCAATGTCACTGAAGATGCCTTG
AAACAAGTGTTTGCTCCATATGGGGAAGTCGTCCATGTCAAGATCCCTGTTGGGAAGAGA
TGTGGCTTTGTTCAGTATGCTAACAGGCCTTCTGCTGAGCAAGCTCTGCAATTGCTGCAA
GGGACCTTGGTTGGTGGTCAGAACGTGAGGCTTTCATGGGGACGAAGCCCTTCGAACAAA
CAAACTCAGCCTCAGGAAGCCACCCAGTGGGGTGCAGGTGCTGCTGCCGGTGCTGCTGGT
GGTTACTATGCTGGATATGGACAAGGGTACGAGGCTTATGGACAAGGGTATGCACAGCCC
CAAGACCCTAACATGTATGGTTATGGAGCCTATGCTGGTTATCCAAACTACCAACAACCA
GCAGCTGCACCTCAGCCGCCACCGCCACAACAGTGAGCCCTCCCCATTGGGTCTTCCAGA
CATGAGATGAGAACCCCTGTTTGAAGGCGCTGTCGAGGCTAATGTTGTAGCACCTGTCGA
TAGAGAGAGAGAGGGTTCCTGGACTCCTGATTTTGATCGCCTCATGGCAAGGTCTATTTG
GTCTATTATGCACTATGTTATGAGCAGCTGTTGTCCCATTGTGATCCTTCAAATGTGTAC
TGGAAACTATGTTTTGTTTTGCCGCATGTCCTTGTCTACTGTCATTTACCATTGCCATCT
GCTGTTAAATTATTATATAACAAAAAAACCGTTTGCTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_15220 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g53440.2	426	3e-169	protein\|RNA recognition motif containing protein, putative, expressed
Brachypodium v1_2	Bradi5g22410.3	427	0.0
Arabidopsis v10	AT1G11650.2	405	6e-128	\| Symbols: ATRBP45B, RBP45B \| RNA-binding (RRM/RBD/RNP motifs) family protein \| chr1:3914895-3917941 FORWARD LENGTH=405