- Probe CUST_812_PI390587928
- Source Contig U35_46833
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_812_PI390587928 | Hv_44K_v2 | GGAACCTTGTATTGAGATTGAAACATAAGCTGCATGCTGTGTGATAATACTAATAGTTGA | 25 | GeneList: yellow MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.962 | 1.383 | 1.025 | 0.943 | 0.402 | 0.389 |
| Raw | 5730.530 | 6293.047 | 4140.143 | 5990.750 | 888.236 | 943.610 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| Harvest21 | ABC47427 | 151 | 3e-25 | 26 - 85 | 100 | 60 / 60 | minus | |
| Harvest35 | U35_46833 | 151 | 3e-25 | 26 - 85 | 100 | 60 / 60 | minus |
Contig Sequence (151 bp)
>U35_46833 151 Hv_44K_v2 TTTTTTTTTTTTTTTTTGGTGAAAATCAACTATTAGTATTATCACACAGCATGCAGCTTA TGTTTCAATCTCAATACAAGGTTCCTCACTGAATAACACTTTATGAGTCAGGCATCTGCT TTAATGCCTTACATCCACCTTAGTACTTTCC
Homology of Contig U35_46833 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |