barSeed - Barley Seed Development Database

Probe CUST_8129_PI390587928

Source Contig U35_15223

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_8129_PI390587928	Hv_44K_v2	AAAGAGAAAAGAGATGCTATTGACACCAAAAACCAGGCAGACTCTGTGGTCTACCAGACG	884	GeneList: darkturquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.361	0.564	1.372	2.016	1.108	1.080
Raw	457.954	1155.309	2399.340	5609.617	1088.527	1139.473

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK364560	2405	7e-23	1817 - 1876	98	59 / 60	plus	ABC02771 ABC02772 ABC33962
MLOC	MLOC_21967.2	1034	7e-23	495 - 554	98	59 / 60	plus	ABC02771 ABC02772
MLOC	MLOC_21967.1	1296	7e-23	495 - 554	98	59 / 60	plus	ABC02771 ABC02772 ABC33962
JLOC1	JLOC1_15231.4	1029	4e-23	450 - 509	98	59 / 60	plus
JLOC1	JLOC1_15231.3	1049	4e-23	451 - 510	98	59 / 60	plus
JLOC1	JLOC1_15231.2	1202	4e-23	604 - 663	98	59 / 60	plus
JLOC1	JLOC1_15231.1	1737	4e-23	720 - 779	98	59 / 60	plus
Harvest21	ABC02772	2616	3e-25	1848 - 1907	100	60 / 60	plus	ABC02772
Harvest35	U35_15223	1665	3e-25	885 - 944	100	60 / 60	plus

Contig Sequence (1665 bp)

>U35_15223 1665 Hv_44K_v2
TCCCCCGGGCTGCAGAAGATTGGCTTGCTAGCACCTTCAAGAATGATGAAGGCATCGATC
TTCTTAAGGATAAACAAGCTCTTCAGCGTCTTACTGAGGCAGCAGAAAAAGCTAAGATGG
AATTGTCAACGCTGACACAGGCCAACATTAGCTTGCCATTCATAACTGCTACTGCTGATG
GGCCCAAACACATTGAGGCAACCCTCTCTAGAGCTAAATTTGAGGAACTGTGTTCAAATC
TGATTGATAGGCTTAAAACTCCCGTCAATAATGCCTTGAAAGATGCCAAGCTGTCTATTA
GTAATCTAGATGAAGTGATTCTTGTGGGTGGATCCACCCGAATCCCTTCAGTGCAAGAAA
CCGTTAGGAAGATTACAGGCAAGGATCCCAATGTTACCGTCAACCCTGATGAGGTTGTTT
CTCTTGGGGCGGCCGTACAGGGTGGAGTTTTGGCTGGAGATGTGAAGGATGTTGTTCTTC
TTGATGTTACTCCATTGTCAATTGGTTTGGAGACGTTGGGTGGTGTGATGACGAAGATTA
TCCCCAGGAATACAACACTGCCCACCTCCAAATCAGAGGTATTCTCAACGGCTGCTGATG
GGCAGACAAGTGTTGAAATTAATGTCCTCCAGGGAGAGAGAGAGTTTGTCAGGGACAACA
AGTCTCTTGGAAGCTTCCGACTGGATGGGATCCCTCCTGCACCACGTGGTGTACCACAAA
TTGAAGTGAAGTTTGACATTGATGCCAATGGCATTCTGTCAGTGGCAGCTGTTGATAAGG
GAACTGGAAAGAAGCAGGATATCACCATCACTGGTGCCAGTACACTACCAAAGGACGAGG
TCGAGAGAATGGTAGAAGAAGCCGACAAGTTCGCTCAGGAGGACAAAGAGAAAAGAGATG
CTATTGACACCAAAAACCAGGCAGACTCTGTGGTCTACCAGACGGAGAAGCAACTGAAGG
AGCTTGGGGACAAGGTCCCTGCTCCTGTGAAAGAGAAGGTTGATGTAAAGCTCCAGGAAC
TGAAAGATGCCATTGCTGGTGGATCGACACAGAGCATGAAAACTTCCATGGAGGCTTTGA
ACCAGGAGGTAATGCAGATCGGACAGGCTATGTACAACCAAACTAGTGCTGGTGGTGCTG
GCTCTACTGATGCTGAAGCCGAGCCTACGCCCAGTGCTGGATCAACAAGCTCAGGAAAGG
GACCCAATGATGGAGATGTTATCGACGCGGACTTCACAGATAGCAATTGAAGGATGGTCA
ATGGATCATGGTGAGTGATACATAGACCTGAGTTCTATTCTGAGTGGCATTCTAGGTTGA
GGATGTTATTTTTGTATCTTGGCTCCATGTATCTGCAAGCTGCTTATTCAGTATATGAAA
TTCGTAGCAGTAGGAATCACCAACATTTGCTGGTGTGATCTTGAATCAAGTATACCTCTC
CGGTAATGCATAGATGCAAAAGGATTTTGGTCGAAACAATAGCACATTCCCTAAAAAATA
AACTAGCCATTTTCGGTCAGCAATGAAATAAGTTTCATTGCGTGCCTAACATTATCGTTA
TAGAACAGATCATGGTCCATCTAAGTTTCGTGGTGTATCTATTGGGATGTTTACAGAACA
GATTTGATATGAGTTCATATGGTTGATGAAAAAAAAAAAAAAAAA

Homology of Contig U35_15223 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os12g14070.1	699	protein\|DnaK family protein, putative, expressed
Brachypodium v1_2	Bradi4g39470.1	689
Arabidopsis v10	AT4G24280.1	718	\| Symbols: cpHsc70-1 \| chloroplast heat shock protein 70-1 \| chr4:12590094-12593437 FORWARD LENGTH=718