barSeed - Barley Seed Development Database

Probe CUST_8127_PI390587928

Source Contig U35_15225

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_8127_PI390587928	Hv_44K_v2	CAGATGCATGCTCGTCTAAATCTGTGAGAAATGTTGTGCCATTATTGGCTGAAAGCTAAA	953	GeneList: purple MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.366	0.514	0.913	1.541	1.099	1.534
Raw	2770.953	6094.377	9445.907	24339.667	6257.693	9489.427

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK370619	1011	2e-23	926 - 983	100	58 / 58	plus	ABC03204 ABC03205 ABC43621
JLOC1	JLOC1_6678.1	1095	1e-23	856 - 913	100	58 / 58	plus
Harvest21	ABC03204	1006	3e-25	933 - 992	100	60 / 60	plus	ABC03204
Harvest35	U35_15225	1055	3e-25	954 - 1013	100	60 / 60	plus

Contig Sequence (1055 bp)

>U35_15225 1055 Hv_44K_v2
GAAACGCACTTCCACCTCCCCTGTTTCTCCAGCTTCGAGCTTTTCCGACGAGAGGAAGGA
AGGAAAGCAGAGGAGAGAGCAGTTGCGCGGGAGACTGCGAGGGGCCGCCGCCATGGAGAA
CGAGTTCCAGGATGGCAAGGAGCAGGTCATCCAAGCATGGTACATGGATGACAGTGAAGA
GGACCAGAGGCTTCCTCATCACCGTGAGCCCAAAGAGTTCATTCCTCTTGCAAAACTTTC
AGAATTAGGTGTTGTAAGCTGGAACCTAAATGCTGATAACTGGGAGAAAGATGAGAATCT
CAAGAAAATCCGTGAGGCCAGGGGATACTCTTATGTGGACATTTGCGATGTATGTCCGGA
GAAGTTGCCAAACTACGAGGCCAAGCTGAAGAATTTCTTTGAAGAACACTTGCATACTGA
TGAAGAGATACGCTATTGTCTTGAGGGCAGTGGATACTTTGATGTGAGGGACCAAAACGA
ACAGTGGATCCGTATAGCAGTTAAGAAAGGCGGCATGATTGTTTTGCCTGCAGGAATGTA
TCACCGCTTTACATTGGATAGTGACAACTACATCAAGGCAATGCGGCTCTTTGTGGGAGA
GCCCATCTGGACGCCGTACAATCGCCCCCATGACCATCTCCCAGCTAGAAAGGAGTATGT
CGACAAGATTATCAACAGAGGTGGGAGCCAAACCGTCGAGGCTCGTTGATGGCTTCTACA
GTGTTCCGCAACGAGTGACTCTTCTGTATGTATCTACATATCACACCAAAAGTTACTGAA
TAAGATGTGTGTGATTGGCTTTCGCGGTGTACTCGTACCAGCATCGATCATGTATCACTT
GTGTGGTAGTCTGCACCGTTACCCGCTCGAAATCTTTCCTGAAACTTCTTCGCCCGGCAA
TGATGCCTGTATTGAATAATAATGATCCAGTGTCAGCAACGGTGTAACGAAAACAGATGC
ATGCTCGTCTAAATCTGTGAGAAATGTTGTGCCATTATTGGCTGAAAGCTAAAAAAAAAA
AAAAAAACATCGTCCTATAAAAAAAAAAAAAAAAA

Homology of Contig U35_15225 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g06620.1	199	2e-140	protein\|1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase protein, putative, expressed
Brachypodium v1_2	Bradi1g74360.1	199	2e-143
Arabidopsis v10	AT4G14710.5	201	2e-115	\| Symbols: ATARD2 \| RmlC-like cupins superfamily protein \| chr4:8424897-8426174 REVERSE LENGTH=201