barSeed - Barley Seed Development Database

Probe CUST_8126_PI390587928

Source Contig U35_15226

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_8126_PI390587928	Hv_44K_v2	GTAGTAGTAATACTATTGATCAATTCAAGCCACATGATCGTGGTATCCATCCATTTAACC	827	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_59388.1	984	2e-24	818 - 877	100	60 / 60	plus	ABC03205
JLOC1	JLOC1_38648.1	1232	8e-25	1006 - 1065	100	60 / 60	plus
Harvest35	U35_15226	958	3e-25	828 - 887	100	60 / 60	plus
Harvest35	U35_34003	747	1e-23	188 - 247	98	59 / 60	plus

Contig Sequence (958 bp)

>U35_15226 958 Hv_44K_v2
GCCGCTTTACATTGGATAGTGACAACTACATCAAGGCAATGCGGCTCTTTGTGGGAGAGC
CCATCTGGACGCCGTACAATCGCCCCCATGACCATCTCCCAGCTAGAAAGGAGTATGTCG
ACAAGATTATCAACAGAGGTGGGAGCCAAACCGTCGAGGCTCGTTGATGGCTTCTACAGT
GTTCCGCAACGAGTGACTCTTCTGTATGTATCTACATATCACACCAAAAGTTACTGAATA
AGATGTGTGTGATTGGCTTTCGCGGTGTACTCGTACCAGCATCGATCATGTATCACTTGT
GTGGTAGTCTGCACCGTTACCCGCTCGAAATCTTTCCTGAAACTTCTTCGCCCGGCAATG
ATGCCTGTATTGAATAATAATGATCCAGTGTCAGCAACGGTGTAACGAAAACAAAAAAAA
AAAAAAAAGGCCGCCGAGCTGATCCGGTTCGCCGCGGCGGCCGCCTCGCAGGGAGCGCCC
GTCGTACATGCGCAGGCGTCGGCTCCCGCGCCGGCGTTCGTCGACATGCCGATCGCGAGG
AAGGCGTCGCTGCAGCGGTTCCTCTCGAAGCGCAAGGACAGGTCCGCCACCGAGGTTCCT
CCGCCGTACGCGCACCGCGAGGAGGCGCCGCGGCCGCTGCCGGCGAAGAAGGGCAAGACG
GAAGCTTCCTCCTGGCTCGCCCTGGGTAGCTTAGGGGGCATGCACGCGAAGTGATCGCCT
CGACATGCATGGCAACGTCGGTACATCGTGCTCTGATCAGTGGGGAGTTGAATCAACCCT
TACTACTTCCGTAGCACGGTGCTATTAACATCTACTCGTAGTAGTAAGTAGTAGTAATAC
TATTGATCAATTCAAGCCACATGATCGTGGTATCCATCCATTTAACCCATGTTTATGTTT
CTTAATTTATTTATGTTGTATATATGAACCTTGTGTTGCCCAAAAAAAAAAAAAAAAA

Homology of Contig U35_15226 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None