barSeed - Barley Seed Development Database

Probe CUST_8123_PI390587928

Source Contig U35_15229

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_8123_PI390587928	Hv_44K_v2	CTTATGTGTAATACCTCTGCGATTATATGTATTTGCCTGCTTCCTCATGGACCTAAAAAA	498	GeneList: greenyellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	6.604	5.038	1.387	0.702	0.224	0.367
Raw	2082.197	2578.867	595.595	502.298	51.451	96.271

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK358988	835	3e-22	675 - 730	100	56 / 56	plus	ABC00320 ABC02155
JLOC1	JLOC1_48617.1	999	1e-22	725 - 780	100	56 / 56	plus
Harvest21	ABC00635	867	3e-25	640 - 699	100	60 / 60	plus
Harvest21	ABC00605	569	3e-25	12 - 71	100	60 / 60	minus
Harvest21	ABC00320	1383	5e-23	1206 - 1261	100	56 / 56	plus	ABC00320
Harvest35	U35_15230	894	3e-25	652 - 711	100	60 / 60	plus
Harvest35	U35_15229	569	3e-25	499 - 558	100	60 / 60	plus

Contig Sequence (569 bp)

>U35_15229 569 Hv_44K_v2
CGATGGCGAGCACCAACATGGGGGGGGGCACCTCCAGATTCATGCTGGCGGCGGGCATCC
CCAGCGGCGCCAACGGCGGCGTGAGCAGCCGTGTCAGCTTCCTCCCGTCCAACCGGCTCG
GCTTGAAGCTCGTGGCCCGGGCCGAGGAGCCGACTGCCGCCGCGCCGGCGGAAGCCGCCG
TGGCCACCAAAGAGCCCGCCAAAGCCAAGCCGCCGCCGAGGGGACCCAAGAGGGGCACCA
AGGTGAAGATTCTGAGGAGGGAGTCCTACTGGTACAACGGGACTGGATCCGTCGTCACGG
TTGATCAGGATCCCAACACCCGTTACCCGGTGGTGGTGCGTTTCGCCAAGGTGAACTACG
CCGGCGTGTCGACCAACAACTACGCCCTGGACGAGATCAAGGAGGTTGCTGCTTGAACGA
TCGAGGCTGCCGCGTGCCCAATCCAATGTTTGTATCAGTAGCTCGTCAAGTGGCGATGTG
AATGTTAGCCTCACAAATCTTATGTGTAATACCTCTGCGATTATATGTATTTGCCTGCTT
CCTCATGGACCTAAAAAAAAAAAAAAAAA

Homology of Contig U35_15229 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None