barSeed - Barley Seed Development Database

Probe CUST_8122_PI390587928

Source Contig U35_27201

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_8122_PI390587928	Hv_44K_v2	CTGTCCATCGTTGGGAATACTATGATATAAACTTGAAGAGAAGAGGTGTTTTAGATTTTG	611	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_72421.1	2578	7e-23	2105 - 2161	100	57 / 57	plus	ABC24315
JLOC1	JLOC1_48163.1	2724	4e-23	2105 - 2161	100	57 / 57	plus
Harvest21	ABC24315	679	3e-25	9 - 68	100	60 / 60	minus	ABC24315
Harvest35	U35_27201	679	3e-25	612 - 671	100	60 / 60	plus

Contig Sequence (679 bp)

>U35_27201 679 Hv_44K_v2
GTTTTGATATCCCTATAAAGACAATAGCATTGGAATGTTATGCGGGCTCCAAGTCTGAAG
TTGACTTTGTCACATTCTTCGTACTGAATGCGAGGCTGTTGGAGTTGATGACATTTCACA
TTCAGTCCCATGTTTACACCACGAAGTTCCTTGCAGAGCAGGGCAGGGAGCTTCAGCTGG
AGAAGAAGGCTTCCAAAGGTGCTCAGTTTCATTTTACAGTCGGTAGATGTGTCCGCAGTG
TTTGGACTATGCATCATGTGCGTGATTTGGATTTAATTGATCCATTCGCATGTTGACACT
GAAGCCAGCTTTGGTCCATTTTGGAGCTATTCTTGCTTATCAACCTATCTTAAAAAAAGA
GAGGACGAATCAATAACGGTAGCTGCAGCCTAAGAAGATGACTTATGTAGATGCTCGCTT
TGGTTCCAGTAGAACATCACTAGGAACGACAGGTCGATAATATGATCTGTTGTAGTTTAT
CATGGTCATTTAGGCTACTTGTGCTTGGAGTCACATTGGCTAGTCAATGGATATTTGCAT
GCATGCATGGGAAATTTAGAACATTATATGGCAGTGAATATGAATGTCGTATGTTGTTTC
GTTGGGAATACCTGTCCATCGTTGGGAATACTATGATATAAACTTGAAGAGAAGAGGTGT
TTTAGATTTTGTAAAATGT

Homology of Contig U35_27201 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None