barSeed - Barley Seed Development Database

Probe CUST_8115_PI390587928

Source Contig U35_27208

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_8115_PI390587928	Hv_44K_v2	AGTTGTCCATGGTTTTTAATAAGATCCATGCCTGGGACAGAGCATGACGTTGTTGTTAAA	504	GeneList: mediumpurple3 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.983	2.924	1.150	0.599	0.451	0.274
Raw	92.109	140.153	48.640	41.947	9.266	6.415

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC43347	578	3e-25	15 - 74	100	60 / 60	minus	ABC43347
Harvest35	U35_27208	578	3e-25	505 - 564	100	60 / 60	plus

Contig Sequence (578 bp)

>U35_27208 578 Hv_44K_v2
AGAAAGAGGCATTTTTTTGTTAAACCTGAGGCTTTACCCCGGTAGATATGAGATTAAATT
CATTGTTGATGGTGTTTGGAAGAATGACCCGCTGCGCCCGACCGTGAACAACCATGGGAA
TGAAAACAACCTTGTGATTGTCACCTGACCTGCATCCTTGTGGTTATTTTTTAGATTGTA
GATTGTCATCAACAAATTGGTGCCAACTGCTTTAGATTGCTTCTTTCTTGCTTGTAGCTT
ATCATCAGTTTTGCCCTCGGTCGTTTCTTGATTATATTCTTTATTAGAGAGCCACGTGCA
ACTTAAACAGTGTAGTAGGGTCAGGGTGTGGTTTTCACCCCGCTGAGATGAGAGAAGAAT
ATAGCCCTGTGTTCTTTCCTACCCCCTCTTTCTCCCTGGAGAAGCATAGCGGGGCGCCCA
AATGCCCCGGTGGCGGTTGACGGTTGGGGGTGGTTCGCCGTCGGTGTCTTTGTAACGATG
TACATACATATCTGATGATAACAAAGTTGTCCATGGTTTTTAATAAGATCCATGCCTGGG
ACAGAGCATGACGTTGTTGTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_27208 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None