barSeed - Barley Seed Development Database

Probe CUST_8112_PI390587928

Source Contig U35_15231

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_8112_PI390587928	Hv_44K_v2	CTCACAAATCTTATGTGTAATACCTCTGCGATTATATGTATTTGCCTGCTTCCTCAAAAA	341	GeneList: greenyellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	6.201	4.715	1.370	0.695	0.238	0.374
Raw	1957.157	2454.097	591.120	509.328	54.042	99.348

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK358988	835	3e-22	666 - 721	100	56 / 56	plus	ABC00320 ABC02155
JLOC1	JLOC1_48617.1	999	1e-22	716 - 771	100	56 / 56	plus
Harvest21	ABC00950	413	3e-25	342 - 401	100	60 / 60	plus	ABC00950
Harvest21	ABC00635	867	5e-23	631 - 686	100	56 / 56	plus
Harvest21	ABC00605	569	5e-23	25 - 80	100	56 / 56	minus
Harvest21	ABC00320	1383	5e-23	1197 - 1252	100	56 / 56	plus	ABC00320
Harvest35	U35_15231	413	3e-25	342 - 401	100	60 / 60	plus
Harvest35	U35_15230	894	5e-23	643 - 698	100	56 / 56	plus
Harvest35	U35_15229	569	5e-23	490 - 545	100	56 / 56	plus

Contig Sequence (413 bp)

>U35_15231 413 Hv_44K_v2
GCACGAGGAAACGATCAGGTGAAGATTCTGAGGAGGGAGTCCTACTGGTACAACGGGACT
GGATCCGTCGTCACGGTTGATCAGGTAACCAACGATCTTGTTGCAATGGAATGCTTCTGT
GAGCGAATTCGATGATCAATGATGAATGGTGCGCGTGTAGGATCCCAACACCCGTTACCC
GGTGGTGGTGCGTTTCGCCAAGGTGAACTACGCCGGCGTGTCGACCAACAACTACGCCCT
GGACGAGATCAAGGAGGTTGCTGCTTGAACGATCGAGGCTGCCGCGTGCCCAATCCAATG
TTTGTATCAGTAGCTCGTCAAGTGGCGATGTGAATGTTAGCCTCACAAATCTTATGTGTA
ATACCTCTGCGATTATATGTATTTGCCTGCTTCCTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_15231 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None