barSeed - Barley Seed Development Database

Probe CUST_8110_PI390587928

Source Contig U35_15233

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_8110_PI390587928	Hv_44K_v2	TTGTAATCTTCGTGCTGCTCAGCAACTTGAGGCCTTGCTACTATTTGTATCAGATCTGTC	1661	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_53902.1	424	7e-23	41 - 100	98	59 / 60	minus	ABC02826
JLOC1	JLOC1_50435.1	950	8e-25	853 - 912	100	60 / 60	plus
JLOC1	JLOC1_34661.1	421	4e-23	38 - 97	98	59 / 60	minus
Harvest21	ABC02826	1739	3e-25	1665 - 1724	100	60 / 60	plus	ABC02826
Harvest35	U35_15233	1721	3e-25	1662 - 1721	100	60 / 60	plus

Contig Sequence (1721 bp)

>U35_15233 1721 Hv_44K_v2
TTCTCCCTGCGCCTCTGGCTCGAGCCGTCTACGATTTCCTCTCCTCGGCTTCTCCCGTCG
CCGAGTCGTCCAAACCCTAGGCGCCGCCGGCCAGGAAGCCCATTTACCAGCCATGTTTGG
ACGCATGCCAAGGAAGACTAGCAACAACACCAAGTATTACGAGGTGCTTGGTGTATCCAA
GACAGCAACCCCGGATGAGTTGAAGAAAGCTTACCGGAAAGCTGCTATAAAAAACCATCC
TGACAAGGGTGGAGACCCTGAGAAGTTTAAAGAATTGGCACAAGCTTACGATGTTCTTAA
TGACCCTGAAAAGAGGGAAATTTATGACCAATATGGAGAAGATGCACTGAAAGAAGGGAT
GGGAGGCGGCGGCAGCAGTGATATGCATAGCCCCTTTGACATATTTGAACAACTATTTGG
GGGTGGGGGCGGCGGCTTTGGCGGGGGCAGCTCGAGAGGACGCAGACAAAAGCGTGGTGA
AGATGTGGTGCATACCATGAAGGTTTCGTTGGAAGACCTGTACAATGGTGCTACCAAAAA
ACTATCTTTATCACGGAATGTTCTTTGTGGAAAATGCAAGGGTAAAGGATCCAAGAGTGG
GGCATCGGCTACTTGCAGTGGTTGCCGTGGTGCAGGAATGAGGATGATAACAAGACAGAT
AGGACCTGGCATGATCCAACAGATGAATACTGTTTGCCCTGAATGCAGAGGATCAGGCGA
GATGATAAGTGACAAGGATAGATGCCCAAGCTGCAGAGGCAACAAAGTAACCCAGGAGAA
GAAGGTCTTGGAGGTTCATGTGGAGAAGGGAATGCAACATGGCCAAAAGATTGTATTCCA
GGGTGAAGCTGATGAAGCTCCTGATACAGTGACAGGAGACATAGTTTTTGTCTTGCAACT
TAAAGAGCACCCAAAATTCAAGAGGAAGTCGGATGACCTGTTCGTTGAGCATACGATCTC
TCTGACTGAGGCGCTCTGTGGCTTCCAGTTTGTTCTGACCCATCTTGATGGCCGACAGCT
TCTGATCAAATCCAATCCTGGGGAGATCATAAAGCCTGGTCAGCACAAGGCCATAAATGA
CGAGGGCATGCCTCAGCATGGCCGGCCTTTCATGAAGGGTCGCCTGTTCGTCGAGTTCAG
TGTGGAGTTCCCTGAGCCTGGAGTACTGACCCCTAGCCAATGCAAGTCACTTGAGAAGAT
CCTGCCGCCAAGACCAGGGAGCCAGTCGTCGGACATGGACGTGGATCAGTGCGAGGAAAC
GACCATGCACGACGTGAACATAGAAGAGGAGATGAGACGCAGGCAGCATCAAAGGCGGCA
AGAAGCATACGATGAAGAAGATGAGGATGAAGGCGGTGCCCCAAGGGGGGTGCAGTGCGC
CCAGCAGTAGGAAACAAGGATGTCGGTCAACTACATTCTACTATTGCTCCTTTCCCGTTT
AATTAAAGTACTCCTAGCTGATCTGATGCGCGGTATTATTATTGTTGGCGTCCTAAGATT
ATGAGGTTGTTAGCCATAAGTATCATTCATCCTTTTGTTGGGCCTATTGCCTGCTGTGTC
GTGTACCGGTATTATTTTGGAGCCCATACTTTGATATTTCAGACTTGGTTGGGTGAATTC
GTCTGTGTGTGTGCTGGTGCAAAGCATTATTATTATTATATTTGTAATCTTCGTGCTGCT
CAGCAACTTGAGGCCTTGCTACTATTTGTATCAGATCTGTC

Homology of Contig U35_15233 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g43930.3	421	0.0	protein\|chaperone protein dnaJ, putative, expressed
Brachypodium v1_2	Bradi3g50610.1	424	0.0
Arabidopsis v10	AT3G44110.1	420	3e-177	\| Symbols: ATJ3, ATJ \| DNAJ homologue 3 \| chr3:15869115-15871059 REVERSE LENGTH=420