- Probe CUST_809_PI390587928
- Source Contig U35_46836
Probe Details
Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
---|---|---|---|---|
CUST_809_PI390587928 | Hv_44K_v2 | AGGATGCCATCTTCAAGTCATATGTAACGGCGTTAAATGAAGATCCTGAGCAATACAGGG | 387 | GeneList: None MasterList: None |
Probe Values
3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
---|---|---|---|---|---|---|
Normalized | 0.601 | 0.582 | 0.970 | 1.711 | 1.143 | 1.618 |
Raw | 41.799 | 60.527 | 94.964 | 269.255 | 61.899 | 94.888 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
---|---|---|---|---|---|---|---|---|
MLOC | AK251807.1 | 2609 | 6e-24 | 497 - 555 | 100 | 59 / 59 | plus | ABC02155 |
MLOC | AK358988 | 835 | 6e-24 | 497 - 555 | 100 | 59 / 59 | plus | ABC00320 ABC02155 |
MLOC | MLOC_65067.2 | 2639 | 6e-24 | 1997 - 2055 | 100 | 59 / 59 | minus | ABC02155 |
MLOC | MLOC_65067.1 | 1504 | 6e-24 | 768 - 826 | 100 | 59 / 59 | minus | ABC02155 |
JLOC1 | JLOC1_42788.2 | 1644 | 3e-24 | 676 - 734 | 100 | 59 / 59 | plus | |
JLOC1 | JLOC1_42788.1 | 2900 | 3e-24 | 545 - 603 | 100 | 59 / 59 | plus | |
Harvest21 | ABC47437 | 553 | 3e-25 | 388 - 447 | 100 | 60 / 60 | plus | |
Harvest21 | ABC27063 | 681 | 1e-24 | 604 - 662 | 100 | 59 / 59 | plus | |
Harvest21 | ABC02155 | 1359 | 1e-24 | 546 - 604 | 100 | 59 / 59 | plus | ABC02155 |
Harvest35 | U35_46836 | 553 | 3e-25 | 388 - 447 | 100 | 60 / 60 | plus | |
Harvest35 | U35_28281 | 681 | 1e-24 | 604 - 662 | 100 | 59 / 59 | plus | |
Harvest35 | U35_374 | 1359 | 1e-24 | 546 - 604 | 100 | 59 / 59 | plus |
Contig Sequence (553 bp)
>U35_46836 553 Hv_44K_v2 ACACCTGCCCCTGACATTACCCTTTTGCCCTCACCGGCGGTGTCGACCATCCGCCGCCGT ATCCAGTGCGAGAGCCGGTAGCAGCCCGAGGACTCTCCCATGGCGGCCATATCGTCGCTT CCGTTCGCTGCACTGCGCCGAGCGGCCGACTGGAGGCCGTCGACGGCGACTGCCGCGGTG AGCGTCTCCGGTGGCGTCATGCTCAACGCGAGGGCTCGGCGGCGCTCACGTTCGGCGGTG CGCTGCGTCATCACTGCCGGCGATATTCCACCTACTGTGGCAGATACAAAGATGAACTTC CTGAAGTCGTACAAACGTCCTATTCCAAGCATTTACAGTACAGTTCTACAAGAACTTTTG GTGCAGCAACATCTGATGAGATACACAAGGATGCCATCTTCAAGTCATATGTAACGGCGT TAAATGAAGATCCTGAGCAATACAGGGCTGATGCACAAAGGATGGAAGAGTGGGCACGCT CACAAAATGGTAATCTGTTAGTTGAATTTTCTTCCAGAGATGGGGAAATAGAGTCCATTC TGAAAGATATATC
Homology of Contig U35_46836 to Model Species (E-value threshold 1e-50)
Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
---|---|---|---|---|
Rice v7 | LOC_Os07g37250.1 | 288 | 4e-55 | protein|THYLAKOID FORMATION1, chloroplast precursor, putative, expressed |
Brachypodium v1_2 | Bradi1g24860.3 | 287 | 8e-61 | |
Arabidopsis v10 | None |