barSeed - Barley Seed Development Database

Probe CUST_8093_PI390587928

Source Contig U35_27216

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_8093_PI390587928	Hv_44K_v2	ATTGCAAGGGGACTAAATTACCTTTACGAGTGTAAGCCAGAGCCAATTATCCACGGTGAT	768	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK369444	2598	7e-23	1399 - 1458	98	59 / 60	plus	ABC18435 ABC18436
MLOC	MLOC_61179.7	1782	7e-23	534 - 593	98	59 / 60	minus	None
MLOC	MLOC_61179.12	2170	7e-23	490 - 549	98	59 / 60	minus	None
MLOC	MLOC_61179.5	1534	7e-23	244 - 303	98	59 / 60	minus	None
MLOC	MLOC_61179.4	1500	7e-23	249 - 308	98	59 / 60	minus	None
MLOC	MLOC_61179.6	1526	7e-23	236 - 295	98	59 / 60	minus	None
MLOC	MLOC_61179.2	1494	7e-23	245 - 304	98	59 / 60	minus	None
MLOC	MLOC_61179.3	1827	7e-23	342 - 401	98	59 / 60	minus	None
MLOC	MLOC_61179.1	859	7e-23	236 - 295	98	59 / 60	minus	None
MLOC	MLOC_61179.9	1676	7e-23	428 - 487	98	59 / 60	minus	None
MLOC	MLOC_61179.10	1683	7e-23	435 - 494	98	59 / 60	minus	None
JLOC1	JLOC1_39966.4	2054	4e-23	1232 - 1291	98	59 / 60	plus
JLOC1	JLOC1_39966.3	1526	4e-23	1232 - 1291	98	59 / 60	plus
JLOC1	JLOC1_39966.1	1363	4e-23	868 - 927	98	59 / 60	plus
Harvest21	ABC27750	455	3e-25	393 - 452	100	60 / 60	plus
Harvest35	U35_27216	831	3e-25	769 - 828	100	60 / 60	plus

Contig Sequence (831 bp)

>U35_27216 831 Hv_44K_v2
GCGGCGGCGGCGGGGCCGACCAGGTTCGGCCTCGCCAGGCAGTCGTCGCTCGACCCGACG
CCGGCGCCCGACGCGGCTGTGCTCGCCATGCCGGAGAACCTGGACGCCACCATGCGGCTG
CTGTACGCGGCGTGCCAGGGCGACGCGGGCGGCGTGGAGGAGCTCCTCAGGGAAGGGGTG
GACGTCGACAGCATTGACTTCGACGGCCGCACGGCGCTGCACATCGCCGCCTGCGAGGGC
CGGGGGGAGGTGGTGCGCCTGCTGCTCGGCTGGAAGGCCAACATCAACGCCCGCGACCGA
TGGGGGAGCACGCCAGCAGCGGACGCTAAACATTACGGGCACTTTGAAGTTTACAACCTT
CTCAGAGCAAGAGGAGCAAAACTTCCGAAAACCAAGAAGACTCCAATGGCTGTGTCAAAT
CCCAAAGAAGTTCCGGAGTATGAACTGAACCCTCTTGAACTCGAGTTCCGAAGAGGAGAG
GAGGTTACAAAGGGTTACTATGTAGCCAAATGGTATGGCTCCAAAGTTTTTGTGAAGATA
CTTGACAAAGATAGCTTCTCAGACGGAGATAGCATAGATGCATTCAAACACGAGCTTACT
TTACTGGAGAAAGCACGGCATCCCAATTTGGTCCAATTTGTGGGAGCTGTTACACAAAAT
GTACCACTGATGATTGTTTCAGAATACCACCAAAAAGGTGATCTAGCGAGTTATCTTGAG
ATAAAAGGTCGCCTGCAATCTTATAAAGCGATCAGGTTTGCCCTTGACATTGCAAGGGGA
CTAAATTACCTTTACGAGTGTAAGCCAGAGCCAATTATCCACGGTGATTTG

Homology of Contig U35_27216 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g39560.2	502	3e-173	protein\|non-receptor tyrosine kinase spore lysis A, putative, expressed
Brachypodium v1_2	Bradi3g48360.1	484	0.0
Arabidopsis v10	AT2G31800.1	476	2e-132	Integrin-linked protein kinase family \| chr2:13520605-13523646 REVERSE LENGTH=476