barSeed - Barley Seed Development Database

Probe CUST_8087_PI390587928

Source Contig U35_15242

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_8087_PI390587928	Hv_44K_v2	GAGAAGTAGAATGAAATGGGATAACAACAACCAGACACCACGTTGAATTTGGAGATATGT	1813	GeneList: orangered4 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	4.210	4.827	1.103	0.832	0.539	0.747
Raw	650.753	1268.882	230.933	296.529	62.366	95.400

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_48618.1	2026	8e-25	1856 - 1915	100	60 / 60	plus
Harvest21	ABC03183	1993	3e-25	1846 - 1905	100	60 / 60	plus	ABC03183
Harvest21	ABC03184	784	2e-21	15 - 67	100	53 / 53	minus
Harvest35	U35_15242	1960	3e-25	1814 - 1873	100	60 / 60	plus

Contig Sequence (1960 bp)

>U35_15242 1960 Hv_44K_v2
ACTAGTACGCGCTACGTGTGCGTGCCCTGCTCGCGCCTCACCGACCCTCACACTCGCTCG
CTCCCTCCCCACCGCACGTCGAGCTCGAGCCAGCCGAGGAGCTCACCGGGGCAAGAATGA
CGTCCCTCTCCTCGTCCGCGGCCACGGCGCGCGCCACCTTCCTCCCTTCCTCCTGCCGGG
CGCGGCCGGCGGGCGGCAGGAGGTCGCAGCTCCTCGTGACCCGCGCGGCGACGTCGAGCC
CCAAGCTCCCCGGCGGGCGGAAGCTGCGGGTGGCGGTGGTGGGAGGTGGCCCCGCGGGCG
GCGCGGCGGCGGAGGCGCTCGCCAAGGGCGGCGTGGAGACGGTGCTCATCGAGCGGAAGA
TGGACAACTGCAAGCCGTGCGGCGGGGCCATCCCGCTCTGCATGGTGTCCGAGTTCGACC
TGCCGCTGGACCTCGTCGACAGGAGGGTCACCAAGATGAAGATGATTTCGCCCTCCAACG
TCGCCGTCGACATCGGCCGCACGCTCGCGCCGCACGAGTACATTGGCATGGTCAGGCGCG
AGGTGCTCGACGACTTCCTCCGTACCCGCGCGCAGAAGGCCGGCGCCGAGGTCCTCAATG
GTCTCTTCCTAAGGTACGAGGAGCCCAAGGAGCGCAACGGCACGTACACGGTGCACTACA
ACCACTACGACAGCTCCAACGGCAAGGTGGGCGGCGAGAAGCGGTCGTTCGAGGTGGACG
CGATCGTGGGCGCGGACGGCGCCAACTCGCGCGTGGCCAAGGATATGGGCGCGGGCGACT
ACGAGTACGCCATCGCGTTCCAGGAGCGCGTTAAGATCCCCGACGACAAGATGCGCTACT
ACGAGGAGCGCGCCGAGATGTACGTCGGCGACGACGTCTCCCCCGACTTCTACGGCTGGG
TGTTCCCCAAGTGCGACCACGTCGCCGTCGGCACCGGCACCGTCACCCACAAGGCCGACA
TCAAGAAGTTCCAGGCCGCCACCCGCCTCCGCGCCAAGGACAAGATCGAGGGCGGCAAGA
TCATCCGCGTCGAGGCTCACCCCATCCCCGAGCACCCCAGGCCCAAGAGGGTGTCGGGGC
GTGTGACACTGGTCGGCGACGCGGCGGGGTACGTGACCAAGTGCTCCGGCGAGGGGATCT
ACTTCGCGGCCAAGAGCGGGCGGATGTGCGCGGAGGCGATCGTGGCCGGGTCGGCGAACG
GGACGCGGCTGGTGGACGAGAGCGACCTGCGCAAGTACCTGGCGGAGTTCGACCGGCTCT
ACTGGCCGACGTACAAGGTGCTGGACATCCTGCAGAAGGTGTTCTACCGCTCCAACGCGG
CGCGGGAGGCGTTCGTGGAGATGTGCGCCGACGACTACGTGCAGCGGATGACCTTCGACA
GCTACCTCTACAAGCGCGTCGTGCCGGGCAACCCCATCGAGGACATCAAGCTCGCCGTCA
ACACCATCGGCAGCCTCGTCAGGGCCACCGCGCTGCGCCGGGAGATGGGGAAGCTCACCT
TGTGATCGCCGACACACCGGAAACGTCCCTGACATCCTGCTTGGGTTGCTCGAAGCTGCG
GCGGATCGATCGGTATAGCAGAGATCCGCGGCCGATCGAACGGATTTGAGGCAGAGGAGA
TGAGAATAAAGAGGTAATGGCGTCGATCGAGAGGTCGTGTCTTGGTCGAACCTGTCCCAT
TTTCTTGTACGGTGATGTTCAGACTTCAGAACAGTTCGTCTGGATTGTTGAAGCACGCCA
ATATTCGATATGTGAATGAATGTAGTATAAACTAAGGTTTCAAGTTTTTAAAATCATGTT
TGTTCTCGCGAACGAGAAGTAGAATGAAATGGGATAACAACAACCAGACACCACGTTGAA
TTTGGAGATATGTTGTGGGATATCCGGTGAAAACAGTGTACCGTGATTATGAATGTATTT
TGATACTACATATGGTTGTTAAAAAAAAAAAAAAAAAAAA

Homology of Contig U35_15242 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os02g51080.1	464	protein\|FAD binding domain containing protein, expressed
Brachypodium v1_2	Bradi3g59430.1	465
Arabidopsis v10	AT1G74470.1	467	Pyridine nucleotide-disulphide oxidoreductase family protein \| chr1:27991248-27992845 FORWARD LENGTH=467