barSeed - Barley Seed Development Database

Probe CUST_8086_PI390587928

Source Contig U35_15243

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_8086_PI390587928	Hv_44K_v2	TACTTGTGCTGGGCTACTTCTGCGCATGTGTGTTCAATGTAAAATCTGTCATGCCTTCTG	597	GeneList: greenyellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	8.677	5.713	1.463	0.708	0.231	0.410
Raw	3625.423	3898.176	835.582	679.314	70.906	144.332

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_69460.1	823	2e-24	40 - 99	100	60 / 60	minus	ABC02859 ABC43020
JLOC1	JLOC1_46022.2	2404	8e-25	660 - 719	100	60 / 60	plus
Harvest21	ABC43018	602	3e-25	543 - 602	100	60 / 60	plus
Harvest21	ABC02859	787	3e-25	619 - 678	100	60 / 60	plus	ABC02859
Harvest35	U35_15244	703	3e-25	535 - 594	100	60 / 60	plus
Harvest35	U35_15243	657	3e-25	598 - 657	100	60 / 60	plus

Contig Sequence (657 bp)

>U35_15243 657 Hv_44K_v2
CAGCAGCACACCAGCTTAGACCATGGCCACCGCCACCTCCACCGTCTACGGCCTCGCCGG
CGCCGCACTCGCCCGCCGGCCAGCCTTCTCTACCAGTACGTGCCAGCGTCGATCTCTTAT
AAGCGCCTAGCTTTTTTCTGTCACCAATTCGACGTTGACGTTGTGTGTCCTGAAATGCTG
GGTCTGTGTACGTAGGCTTCACGAGTGGCGGCCGGGTGTCGGCGAGGAACCCGCTGATGA
CGAGGAACCTGGAGAGGAACGGCAGAATCACCTGCATGACGTTCCCACGGGACTGGCTGC
GGAGGGACCTGAACGTGATCGGGTTCGGGCTGATCGGGTGGCTGGCGCCGTCGAGCATCC
CGCTGATCAACGGCAACAGCTTGACGGGGCTCTTCTTCTCCAGCATCGGCGAGGAGCTCG
CCCACTTCCCCTCGCCCCCGGCTCTCCAGTCGCAGTTCTGGCTGTGGTTGGTGACGTGGC
ACCTGGGTCTGTTCATCGCGCTCACCTTCGGCCAGATCGGGTTCAAGGGCAGGACCGAGG
ACTACTTCCAGAAGTAGTGGATTAACTAGCTTTTGGATCATGCATGTGCGTCGTCCTTAC
TTGTGCTGGGCTACTTCTGCGCATGTGTGTTCAATGTAAAATCTGTCATGCCTTCTG

Homology of Contig U35_15243 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g33830.1	143	3e-77	protein\|membrane protein, putative, expressed
Brachypodium v1_2	Bradi5g09530.1	145	1e-83
Arabidopsis v10	AT1G08380.1	140	5e-58	\| Symbols: PSAO \| photosystem I subunit O \| chr1:2641004-2641739 REVERSE LENGTH=140