barSeed - Barley Seed Development Database

Probe CUST_8085_PI390587928

Source Contig U35_15244

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_8085_PI390587928	Hv_44K_v2	TTCTGCGCATGTGTGTTCAATGTAAAATCTGTCATGCCTTCTGGTTTCGTGCATGCGTGT	551	GeneList: greenyellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	8.402	5.428	1.360	0.668	0.207	0.345
Raw	2543.097	2683.518	566.065	470.329	45.883	88.776

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_69460.1	823	2e-24	23 - 82	100	60 / 60	minus	ABC02859 ABC43020
JLOC1	JLOC1_46022.2	2404	8e-25	677 - 736	100	60 / 60	plus
Harvest21	ABC02859	787	3e-25	636 - 695	100	60 / 60	plus	ABC02859
Harvest35	U35_15244	703	3e-25	552 - 611	100	60 / 60	plus

Contig Sequence (703 bp)

>U35_15244 703 Hv_44K_v2
GGCCGGTGCTCCACACGGAGACGTACGATCCTTTGCATCGCAGCACACCAGCTTAGACCA
TGGCCACCGCCACCTCCACCGTCTACGGCCTCGCCGGCGCCGCACTCGCCCGCCGGCCAG
CCTTCTCTACCAGCTTCACGAGTGGCGGCCGGGTGTCGGCGAGGAACCCGCTGATGACGA
GGAACCTGGAGAGGAACGGCAGAATCACCTGCATGACGTTCCCACGGGACTGGCTGCGGA
GGGACCTGAACGTGATCGGGTTCGGGCTGATCGGGTGGCTGGCGCCGTCGAGCATCCCGC
TGATCAACGGCAACAGCTTGACGGGGCTCTTCTTCTCCAGCATCGGCGAGGAGCTCGCCC
ACTTCCCCTCGCCCCCGGCTCTCCAGTCGCAGTTCTGGCTGTGGTTGGTGACGTGGCACC
TGGGTCTGTTCATCGCGCTCACCTTCGGCCAGATCGGGTTCAAGGGCAGGACCGAGGACT
ACTTCCAGAAGTAGTGGATTAACTAGCTTTTGGATCATGCATGTGCGTCGTCCTTACTTG
TGCTGGGCTACTTCTGCGCATGTGTGTTCAATGTAAAATCTGTCATGCCTTCTGGTTTCG
TGCATGCGTGTGGCTTCGCAAGCCGTGTGATTGCTGTTTGTTAATTGCCCCTCTTCCATG
CTAAAAAAAAAAAAAAAAAGTTCAACAAAAAAAAAAAAAAAAA

Homology of Contig U35_15244 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g33830.1	143	4e-80	protein\|membrane protein, putative, expressed
Brachypodium v1_2	Bradi5g09530.1	145	2e-87
Arabidopsis v10	AT1G08380.1	140	1e-58	\| Symbols: PSAO \| photosystem I subunit O \| chr1:2641004-2641739 REVERSE LENGTH=140