barSeed - Barley Seed Development Database

Probe CUST_807_PI390587928

Source Contig U35_22880

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_807_PI390587928	Hv_44K_v2	GCGGGCACCATTGTTTTGCCGTGGAATTATTATTATTTATGTGAGAAATATAAGGAGATT	848	GeneList: red MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.451	2.035	1.700	0.809	0.194	0.172
Raw	6314.540	13380.900	9842.900	7503.820	621.317	600.664

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK374098	1257	2e-24	1190 - 1249	100	60 / 60	plus	None
MLOC	MLOC_60492.1	1389	7e-23	1284 - 1343	98	59 / 60	plus	None
MLOC	MLOC_60492.2	1439	7e-23	1334 - 1393	98	59 / 60	plus	None
MLOC	MLOC_60492.3	1319	7e-23	1214 - 1273	98	59 / 60	plus	None
JLOC1	JLOC1_39452.1	1949	4e-23	1879 - 1938	98	59 / 60	plus
Harvest35	U35_22880	934	3e-25	849 - 908	100	60 / 60	plus

Contig Sequence (934 bp)

>U35_22880 934 Hv_44K_v2
GCGCGCCATGGAGCGCCACGTCGCCGAGCTCGACTTCACCCCCGGCGGCGTCGCTTCGCT
GCTGCAGGTGACGGACCTCCGCGGCTCCCCCGGCCCCGCCAAGAAGGACCTCCGCGTCGC
CATGAAGCAGGTGCTCGACCTCTTCCAGGACAACTACCCGGAGCTCGTCGCCCGGAACAT
CCTGATCAACGTGCCGTTCTCCTACTACGCCTTCAGCGCCGTCTTCTTCCCGTTCCTGAC
GCAGAGGACCAAGAGCAAGCTGGTGGTGGCGCGGCCCTCCAAGGTCACCGAGACGCTGCT
CAAGTACATCCCGATCGAGGCCATCCCGGTGAAGTACGGCGGGCTGAAGCGCGACGGCGA
GGACGCCGAGTTCTCCGGCGAGCACGACGCCGAGATCGCCGAGGTGGTCGTGAAGGCGGG
CGCCACCGAGGCCATCGAGATCGAGGCGGCCGAGGGCGACACCACGCTGACCTGGGACCT
GACGGTGCTGGGGTGGGAGGTGAGGTACACGGAGGAGTTCGTGCCGGCCGACGAGGGCGC
GTACACCATCGTGGTGAGCAAGGGCAGGAAGGTGGGCGCCGGGGAGGAGGCGGTGCGCAA
CTCGTTCCGCGCGGCGGAGGCCGGCAAGGTGGTGATCACGGTGGAGAACGCGACCCGCTG
GAGGAAGCGGGTGCTCTTCCGGCACAAGGCCAAGAGCGCCCTCGCCAAGAAGTGCTGAAG
ATTTGGGGGCAGATTCTTTGGAAGCTGAGATCTTTGTGTGTGTGTGGATTCTACATTCGT
GGATTCTACATTCATTCCATTCTTTTGTGCAAGAGAGCAGTCACTAGTGGTACATCGTGT
CGTGTTTGGCGGGCACCATTGTTTTGCCGTGGAATTATTATTATTTATGTGAGAAATATA
AGGAGATTTTTTTACCCAAAAAAAAAAAAAAAAA

Homology of Contig U35_22880 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g45990.2	451	5e-119	protein\|patellin-5, putative, expressed
Brachypodium v1_2	Bradi1g32420.1	549	4e-117
Arabidopsis v10	AT1G30690.1	540	1e-76	Sec14p-like phosphatidylinositol transfer family protein \| chr1:10888284-10890085 FORWARD LENGTH=540