- Probe CUST_8070_PI390587928
- Source Contig U35_27223
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_8070_PI390587928 | Hv_44K_v2 | GCGCAAGCGCAATTTTGTATTTGTTTTGATCGTCTGATGTATACATTGTTGTTCGTATAT | 241 | GeneList: bisque4 MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.166 | 2.855 | 2.042 | 1.046 | 0.503 | 0.692 |
| Raw | 241.946 | 972.609 | 555.309 | 455.580 | 76.385 | 113.374 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK364756 | 1930 | 2e-24 | 1820 - 1879 | 100 | 60 / 60 | plus | ABC29985 |
| MLOC | MLOC_77802.1 | 994 | 2e-24 | 11 - 70 | 100 | 60 / 60 | minus | ABC29985 |
| JLOC1 | JLOC1_51869.1 | 1609 | 8e-25 | 1451 - 1510 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC29985 | 343 | 3e-25 | 242 - 301 | 100 | 60 / 60 | plus | ABC29985 |
| Harvest35 | U35_27223 | 343 | 3e-25 | 242 - 301 | 100 | 60 / 60 | plus |
Contig Sequence (343 bp)
>U35_27223 343 Hv_44K_v2 CGCGAGCACACGCATGGACAAGTGGTCCGAGGTCCGGTGATCGGAGAGCTACGAGAGCAA ACTCCCTCTAAGGTACAAGCATCATCGCTCGGGCGGGGCGGCCGGCCGTGTACTTGCGCG TGGAAGCCATTACTCCTGCGCGCAGCTCGACGGGGATCGTCGTCAGATTTGTCCTGTGGA TTGAAAGAGAAATATGGCCGGGGTGTTGCATATTCAGACATGGACACTCCAAGGGAGAGA GGCGCAAGCGCAATTTTGTATTTGTTTTGATCGTCTGATGTATACATTGTTGTTCGTATA TATATTCAACCAGTACAAATTTGGCCAAAAAAAAAAAAAAAAA
Homology of Contig U35_27223 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |