barSeed - Barley Seed Development Database

Probe CUST_8067_PI390587928

Source Contig U35_27225

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_8067_PI390587928	Hv_44K_v2	GTGAGGTTCTGCCTGTAAAACATTTGTGGTTACTTTAGTGATCACCCTTATGTGATCACA	537	GeneList: red MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.229	1.706	1.801	1.023	0.260	0.282
Raw	1319.867	2868.506	2590.950	2397.610	202.862	245.130

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_4563.1	3001	2e-24	96 - 155	100	60 / 60	minus	None
MLOC	MLOC_4563.2	3042	2e-24	81 - 140	100	60 / 60	minus	None
JLOC1	JLOC1_2858.1	2963	8e-25	2832 - 2891	100	60 / 60	plus
Harvest21	ABC48324	678	3e-25	82 - 141	100	60 / 60	minus
Harvest35	U35_27225	678	3e-25	538 - 597	100	60 / 60	plus

Contig Sequence (678 bp)

>U35_27225 678 Hv_44K_v2
CAGATGATGAACAGGAAATTCAAAGCAGAGGTGATGATGACCAGAGCTGCAGGAATGAGA
TAACTGAACGTGTTGACGAGATCACTGAATGTGTCGACGAGATCATTGACGTCGGTGGTG
AGAGTGCTGCTACTTACCATGGCACACCAAGATGCAGGGGTAGCTTTGACATCAAGGAGG
AGAAAGTGGAAAGGAAGATCTGGTTCCCAAGGTCCGATAGCGGTAGGGGTTTCCGGTCCC
TGCCATCCTCTCCTTCCAAGATCCTGGGAATGAGGAGAGGCTCAGACTGTGCAGGCAGGA
AACCGAAGGTGGTTGGCGACGACGATCGCAGATACGGCTATGAGGATTCGGTGTCGACGA
GCAGCAGTAAGTTCCTCAGCAAATGCAAGCAGGCGATCAAGAAAGCGGTACACAAATGAG
GCAATCTCAGCCCTGTGTTTATTCTTTTCCATGTGGTGTTTGTTACATTTATCTGAAGTG
CTATTATTTGTTCCTGTAGCTGAGTAAGTTAGTGATGCATAGCTTGCAGATTACTGTGTG
AGGTTCTGCCTGTAAAACATTTGTGGTTACTTTAGTGATCACCCTTATGTGATCACATTG
GTGTGTGTGTGTGTGTGTGTGTGTACAACTATTTGTTGATCTGTGAAAAAAAGATAGAAC
CAAATTCTTAAATTAAAA

Homology of Contig U35_27225 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None