barSeed - Barley Seed Development Database

Probe CUST_804_PI390587928

Source Contig U35_22882

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_804_PI390587928	Hv_44K_v2	GTTAGGGCCAGTGACCAACAAGTTATTGGTAACGACATTGCTGACAGCACAAACTGTATA	1524	GeneList: green MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.222	0.946	1.444	1.059	0.862	0.631
Raw	15.976	19.036	25.123	28.289	7.593	5.888

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_58431.3	3884	2e-24	2791 - 2850	100	60 / 60	plus	ABC15458
MLOC	MLOC_58431.4	4441	2e-24	2727 - 2786	100	60 / 60	plus	ABC15458
MLOC	MLOC_58431.5	4333	2e-24	2677 - 2736	100	60 / 60	plus	ABC15458
MLOC	MLOC_58431.1	4449	2e-24	2838 - 2897	100	60 / 60	plus	ABC15458
MLOC	MLOC_58431.2	4490	2e-24	2879 - 2938	100	60 / 60	plus	ABC15458
JLOC1	JLOC1_37959.4	4408	8e-25	2716 - 2775	100	60 / 60	plus
JLOC1	JLOC1_37959.3	4380	8e-25	2688 - 2747	100	60 / 60	plus
JLOC1	JLOC1_37959.2	4513	8e-25	2821 - 2880	100	60 / 60	plus
JLOC1	JLOC1_37959.1	4472	8e-25	2780 - 2839	100	60 / 60	plus
Harvest21	ABC18131	1584	3e-25	1525 - 1584	100	60 / 60	plus
Harvest35	U35_22882	1584	3e-25	1525 - 1584	100	60 / 60	plus

Contig Sequence (1584 bp)

>U35_22882 1584 Hv_44K_v2
GGCAAGCGCTAGCTTCCTTGCACAGTGGTCTGCAGATTGGTCAAGGCATCCCTATTTCAC
ATGTTGTGGAGTGGCTTGCAATGGAGGATGAGGACATTGAAAGTCTCTTAGAATACCATG
GTTTTGGATCGAGGCAGTATGAAGGACCGTACCTAGTGAAAGAAGGGCCTTTTCTTAACA
GTGAGAACGATTTTCCATCTGGTTGTTCTGAACTTGTGCACTCGAAGAAATCACAGAGAA
TAGTCGATGATGTATCTTTTGGTCCAGTTTCTGCGCCCACTGGTCAAAAAGCAACTGTTG
CACCATATTCTGGCAGGTTTCCTTCCCCAGCTAGCAAAAGAGAGCTGATTCCGCCACGGT
CTGCCCTTGTGATTCCTGTTAGTGCCAAAAAAGAGTTTGGCCCATCGTCTTCTGGACCTG
TTTCTCCCACTTCTAGCAGACAGATTACCTCGCCGTATTCCGGTCCGTTTTCTCCAAAAG
CTGGCAATAAACAATTCAATTCAACATATTCAAGTCCTATTTCCCCAACTGGTAGCAGAA
AGGGAAGTGTTCCAGTTATTCCTAGCACTTCTCCGCGTGCTACCAAGCACACACTCTCGC
ACACAGGATGGATGGATGACCAGAGAGTAGCTTCACCGAAAGCAAAAGGCAAGACCACGA
TTACTGATGATTTCATAATATCTGAAGACCAGAATGCTGATTGTGTGGACTTCTCGAGAG
AACAAACGGAGATACCGCAGTCAGAATCCTACACTCCACATGTTGATGCTTTGGTGGCAA
CCATAGTCTCACATCCTCTAGCAGACGGTGTATCTTCAGATTACGCCCACATGCATGAAG
AGGAAGATGAGCTCAGGGCACATGGCTCTGGCAGCGATACAGATTTGGCTGATGAAAGTC
CATCATGTCATCAAGTCAATCTAATAGAACACGTGTGGCCTACAGGTTCCCTATTGCCTG
ATTATGAGTAATGGAGATCACCAAATTAATAATGAAACAACAGATGACTCGTTACCAATT
GTTGTGTCTCCAAAGAAAACAATTTCAGATGAAAGGCTAAAGATGATATTGAGGAAATGG
AGGCAGCGTGCTGCGGATCAGAGATCTCTGAGAGAGCAGAAAAATGCCCTTGCTATTGCA
GCATTGAATTCTCTGTCACTTGGACCACCAGTTCACCAAACTGCAGTGGTGCCAAAGCAT
GCAGTCCATGAGCTAGACATTGGCCATGCCTTTAAAGAAAGATACACACGACAACGAAGA
TCTTGGTCACGACTAAATGTCTCAGAGTTGTCTGGTCCTATTTTAACTGAAAGGAAACCT
GATGCCAGGTGCATCTGCTGGAAGATGCTAGTAGTTGTCCCACCAGGTGCTATGAAATCT
CAGAGCAACAATGTTGCCTCGAAATGGTTACTCAAAAAGCTCATGGGTTCTGGAAATGAA
GATAATGGATTGCTTTACACTTCAGCAGACCTCTCAATTTGGAGAACGTGGCTCAGTTCT
CCAAGTGTATGCTGTCTATCTGTTGTTAGGGCCAGTGACCAACAAGTTATTGGTAACGAC
ATTGCTGACAGCACAAACTGTATA

Homology of Contig U35_22882 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g45160.1	1797	7e-160	protein\|SAC3/GANP family protein, expressed
Brachypodium v1_2	Bradi1g19627.1	1794	0.0
Arabidopsis v10	None