barSeed - Barley Seed Development Database

Probe CUST_8043_PI390587928

Source Contig U35_27232

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_8043_PI390587928	Hv_44K_v2	TGCTAGCTGAAGTGTTTCGGCTTAGCTTACCCGTTGTTGAATTGTACGTAGTATGAACAT	973	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_68511.1	1634	2e-24	1540 - 1599	100	60 / 60	plus	ABC13879 ABC26283
JLOC1	JLOC1_45334.1	1135	8e-25	42 - 101	100	60 / 60	minus
Harvest21	ABC26283	1045	3e-25	13 - 72	100	60 / 60	minus	ABC26283
Harvest35	U35_27232	1045	3e-25	974 - 1033	100	60 / 60	plus

Contig Sequence (1045 bp)

>U35_27232 1045 Hv_44K_v2
CCACCACCACCGATACCATCATGACGCGATCGCCGCCTCCGCTCCCGGTGGACCACGGCT
GCTACGCGGCGTGCAGCAACCCGGAGGTCACCCAGCAGCACACGACGATCACCATGCGCC
GCTCGCCATTCGCCGACGTCGCCACCGACTGCTCCTCGTCTTCCTACGCCTCCAGCATGG
ACAACATATCCAGGCTCCTCGACGGTTTCATGAAGAGCTCCCCGCCCACCGCCACCGACG
TCAAACCCAACATAGCCGTGTTCAGCGACCCTTTCATGTCCTTCGACCGCATGACCGGCG
CCGGCGCGGGGCTGGCTTTCGTCCCTGGCGTTCAGCAGCAGCAGCAGCAGATGCCGGTGT
TAATGGGGGGCATGATCTATGATGATGAGGCCACGGGACAGCAGCAGCAGCTCCAACATC
AGTTGCCACTGTGTTCGATCGAGAAGTGGCTTCTCGACGAGGCGGCGGAGCAGGTCGCTG
ACCTGATGGAGCTCTCCGACGGTGGCTGCTCCTCCCTGCCATTGCTATACTAGCCAGTAC
GTACTACTGTGGTACTAGCTGGAAAAGGCAAACCAACGAACCATGCCACTTTCCCAAATA
CATACTGTAGTTAATTACATGCATATACATCTATATATAATAGACAGGTTAAGTAATTTC
TGTTTAGTTACATGTTCTAGCTAGCTTCTTGGAGATCGCTCCGATGACACCATCAAATTA
CCAGAGAGAACACTCCCTGGAAGAGAGACTAAGTAGTTATTCAGAGAGACGATTACTAAT
GGTGCATGGGATGGGATGATGAGAAGAAAGCCAGGTTGTTGCCAGAAGGAACAAGACAGT
AACAGGAAATAAATAACAGGCGAGACGTTACGTATGATCTGCAAGCATGATGCGGCTAAG
GGTTGTCATGTCTGTTCTTGAATATAGTTTTTTGTGGCGAAATTTATTTTTGTTTCTGGG
TGATATGTACACTTGCTAGCTGAAGTGTTTCGGCTTAGCTTACCCGTTGTTGAATTGTAC
GTAGTATGAACATAAGNCAGTGAAG

Homology of Contig U35_27232 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None