- Probe CUST_8042_PI390587928
- Source Contig U35_12626
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_8042_PI390587928 | Hv_44K_v2 | GTATGATTGGTTGTTAGGCTTGCATCATCAATCAGTTGTGTCTAAGAACTAATTTAATGG | 437 | GeneList: None MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.942 | 0.807 | 3.669 | 0.569 | 1.302 | 1.159 |
| Raw | 2.857 | 3.670 | 29.011 | 3.337 | 2.939 | 3.010 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_37666.2 | 2082 | 7e-23 | 1820 - 1879 | 98 | 59 / 60 | plus | ABC23726 ABC30248 |
| JLOC1 | JLOC1_24405.2 | 2050 | 4e-23 | 1816 - 1875 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC23726 | 536 | 3e-25 | 438 - 497 | 100 | 60 / 60 | plus | ABC23726 |
| Harvest35 | U35_12626 | 536 | 3e-25 | 438 - 497 | 100 | 60 / 60 | plus |
Contig Sequence (536 bp)
>U35_12626 536 Hv_44K_v2 GCACGAGGGGACGGCAGCGGCGAGGCGTCGCTCAAGGGCCGGGGGCTGTGCCTGGTGCCG ATATCGAGCACGTTCGCGGTGGCAAGCGATGGGCCCGTCGACTTCTGGACTCCCTTTGGC GGCCAGTTTAGGTAGATGAAGGCCGCCCCGCCGGGTGGAACGAACGTGCGGCGCAGATCG ATCTGACGGCGTTCCTTGATCGAACTTGATGATTTAGTATCTATAAGTAGTTCATGATCG TAATTTGTAACGGATAGCACTACGTACTGATGAAGCTATATGGTTAGCTAGATGAACCTT TGGAATGAGTGCTTCAAGACTTGTACTCATTCTTCAGGTTCATCAGGGAATAATCAATGG ATTTAACTCAGGGACCAGAGGTAGCTGAGAGGCTGAATTATGTCAAAGTGATCACCCGAT CATCGTCGATCGGGTTCGTATGATTGGTTGTTAGGCTTGCATCATCAATCAGTTGTGTCT AAGAACTAATTTAATGGTTCAATACTTTAATCCAGCGTTAAAAAAAAAAAAAAAAA
Homology of Contig U35_12626 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |