barSeed - Barley Seed Development Database

Probe CUST_8041_PI390587928

Source Contig U35_12627

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_8041_PI390587928	Hv_44K_v2	CTTTAATACGACCATACCAGTGGCAGAGTCTACTCATACCGGTTTTGCCAAATGACATGC	629	GeneList: orange MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.798	0.975	1.608	1.896	0.907	0.884
Raw	38.352	65.935	104.193	193.698	32.021	34.713

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK366336	3327	2e-24	2345 - 2404	100	60 / 60	plus	ABC21178
MLOC	MLOC_68729.1	4049	2e-24	1505 - 1564	100	60 / 60	minus	ABC21178
MLOC	MLOC_68729.2	3048	2e-24	623 - 682	100	60 / 60	minus	ABC21178
JLOC1	JLOC1_45501.1	4056	8e-25	2390 - 2449	100	60 / 60	plus
Harvest21	ABC34341	702	3e-25	630 - 689	100	60 / 60	plus
Harvest35	U35_12627	699	3e-25	630 - 689	100	60 / 60	plus

Contig Sequence (699 bp)

>U35_12627 699 Hv_44K_v2
TTCTGATGTTCTTTCACATGACCATGTGAATGATGGAGAACTTGATATCTTTGTCAATGA
TACTATCTTGCCGCTTATACGGTCTCGCCTTAGTGAAGGATCTGAATCATCGCCAAGTTC
CCAAGACTCTCCTTCTGAAAGCATATTCTCTTTAAATGATACACCCGACTTGGACTTGGA
GGAGCCATCTTCCATTGGTCATGGAGACGTAGTTGGGCACAACAGTATATTGCGATGGGC
TAAGGCCAAAAAATATGGATCTCTACAAGTTGTCTGTCAGTACTACCAGTTGCAGTGTCC
TGTCAGGGGTTCATCACTTAATTTTCATCCGTTGGAGCACCTGCACTCATTGAAGTTTCA
CCGGCCAGGTGAAACTGCTCTTCATCTTGCCGGGTCAACTATTGATCTTCGGTCACGTGA
TACAAGCTTAGAGGTGGCTGAGATGCGTAATGCACTCTTCGCTGAAGAGGAATCGACTGC
TCTATCCACATGGGCTGTTGCAACAATATGTGGATGCCTCAGGTTGGAACATGTAATTAC
GCTTTTTGCTGCCGCACTCCTGGAGAAACAGATTGTTATTGTCTGTTCTAATTTGGGAAT
GCTTTCAGCTTCAGTTTTATCCATAATACCTTTAATACGACCATACCAGTGGCAGAGTCT
ACTCATACCGGTTTTGCCAAATGACATGCTGGATTTTCT

Homology of Contig U35_12627 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g53700.6	797	4e-115	protein\|DENN domain containing protein, expressed
Brachypodium v1_2	Bradi3g57260.1	830	5e-124
Arabidopsis v10	AT5G35560.1	765	2e-73	DENN (AEX-3) domain-containing protein \| chr5:13742458-13747464 REVERSE LENGTH=765