- Probe CUST_8037_PI390587928
- Source Contig U35_24601
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_8037_PI390587928 | Hv_44K_v2 | GGGATCCTTGCAATGCTCATTTTCACAGATAATTTGGATCTGATAAACAATATGTAGTAC | 408 | GeneList: royalblue MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 3.727 | 3.683 | 1.235 | 0.525 | 0.121 | 0.080 |
| Raw | 2557.617 | 4271.189 | 1155.900 | 790.704 | 66.297 | 46.487 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_60097.1 | 549 | 9e-22 | 52 - 109 | 98 | 57 / 58 | minus | ABC21328 ABC26692 |
| JLOC1 | JLOC1_39160.1 | 450 | 5e-22 | 8 - 65 | 98 | 57 / 58 | minus | |
| Harvest21 | ABC21328 | 532 | 3e-25 | 409 - 468 | 100 | 60 / 60 | plus | ABC21328 |
| Harvest35 | U35_24601 | 532 | 3e-25 | 409 - 468 | 100 | 60 / 60 | plus |
Contig Sequence (532 bp)
>U35_24601 532 Hv_44K_v2 AGGTGGAGAACGGTTGGCGTTTGAACAATCTCCTGTTCTCCACCTGTTGACCACTATGAA GATAGCCAACGCCCTGCTGCTCCTGGTGTCCCTCGCTCTCGTGGTGCTGTCATCATCAAG CACATACACACCGTCGATGGTAGAAGGTCGCGCGGTGGTGGTGCCGGCGGCGGACTGCTC GGTGACTGTGATCGGGCGGGGCGAGAAGTGCGAGCCCCGGAAGTGCGAGGCGGAGTGTCG GAGGCAGCACGATGGTATGGGCGCGTGCGCCGCCATGGGGTGCAGTTGCGCCGTCTGCGC CAAGTATCCTCCCTCCTCCTCCGTCGCAAAGGGAAACCGATACTGATAAATGACGACTAG TAGTAGTACACCAGTGCTAGGTTCAAAGTGTGTACTCACTAGATAGCGGGGATCCTTGCA ATGCTCATTTTCACAGATAATTTGGATCTGATAAACAATATGTAGTACATGAATGCTTGA CAACAAGAAATAATCCTTGATGATTAACTCGTGGTAAAAAAAAAAAAAAAAA
Homology of Contig U35_24601 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |