barSeed - Barley Seed Development Database

Probe CUST_8034_PI390587928

Source Contig U35_24604

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_8034_PI390587928	Hv_44K_v2	ACTTTAGATGCTGTGTGGATATAACTCTACTCAATAATGTAAATGAAGTGTGCAGTGGCT	646	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_50009.1	643	2e-24	97 - 156	100	60 / 60	plus	ABC17772
MLOC	MLOC_81457.3	1841	7e-23	604 - 663	98	59 / 60	minus	ABC11899 ABC17772
MLOC	MLOC_81457.4	902	7e-23	106 - 165	98	59 / 60	minus	ABC11899
MLOC	MLOC_81456.1	3594	7e-23	1177 - 1236	98	59 / 60	minus	ABC04846 ABC11899 ABC11930 ABC17772
JLOC1	JLOC1_54183.4	1010	4e-23	606 - 665	98	59 / 60	plus
JLOC1	JLOC1_35824.1	844	6e-21	785 - 844	97	58 / 60	plus
Harvest21	ABC19789	709	3e-25	647 - 706	100	60 / 60	plus
Harvest35	U35_24604	709	3e-25	647 - 706	100	60 / 60	plus

Contig Sequence (709 bp)

>U35_24604 709 Hv_44K_v2
GTCCCCCGGGCTGAGGAATTCGGACGAGGCTTCATTACTACCTCTCTGCCCGTCAGTTTG
TTCCCCTCAATCTTGCTCTGGTTGATTCCTGCGAGTAATCATGGTTCATTTGCTTTATTG
TGGGTGACGAATTTGATGCTTATTATGCGAAATGTTTGAGTGGTTTGGGGTTTTTGGCTT
ATTATGCGAAATAAGCAGTACATGTTTGGGTGACCGATTCGATTTACTGGGTGAATTCGA
GTGACGAATTTGCACTGCTGACATAGTTCTTCAGTTAATTGCTCTGCTGTGCTGTCGAGA
ATTCGAGATGAGAGCGAACCCAGCAAATGCAGGATGAACAGATAGTTTCAGCACAAATTA
GGCTTCTCTGTCCCTATGATGTGATGCTCTTGGGATGGTGATGATAGCGACACGGTTGCG
GTTTTACTTGCAGGGCCAACGACGTGTGCAAGGACGGGAAGAGGCAGACGATCAACGCCG
AGGACGTCTTCAAGGCGCTCGACGAGATTGAGTTCCCCGAGTTTGTAGAGCCCCTGAGGA
CTGCACTGGAAGGTCAGTCTTGTTTTCTACTTGTATCCTCCATTCTGTTACAGTCTGCTG
CTCTTGCTCAGCTGTGCCCGTGAAGCATATGTTCTTTGAGTTTAGAACTTTAGATGCTGT
GTGGATATAACTCTACTCAATAATGTAAATGAAGTGTGCAGTGGCTCAG

Homology of Contig U35_24604 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None