- Probe CUST_8032_PI390587928
- Source Contig U35_24606
Probe Details
Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
---|---|---|---|---|
CUST_8032_PI390587928 | Hv_44K_v2 | CTTGTCCTTTATTTCCATGGTTCTGAATTCAAAAATGAGTGTACTTTCGAGCTCTTGAAA | 386 | GeneList: purple MasterList: None |
Probe Values
3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
---|---|---|---|---|---|---|
Normalized | 0.331 | 0.808 | 1.020 | 1.489 | 1.040 | 1.483 |
Raw | 10.717 | 43.884 | 44.754 | 99.263 | 26.005 | 40.879 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
---|---|---|---|---|---|---|---|---|
MLOC | AK355807 | 2449 | 3e-21 | 1150 - 1206 | 98 | 57 / 58 | plus | ABC19755 ABC43911 |
MLOC | MLOC_33177.1 | 565 | 3e-21 | 342 - 398 | 98 | 57 / 58 | plus | ABC19755 ABC43911 |
JLOC1 | JLOC1_21529.1 | 557 | 2e-21 | 333 - 389 | 98 | 57 / 58 | plus | |
Harvest21 | ABC19755 | 457 | 3e-25 | 385 - 444 | 100 | 60 / 60 | plus | ABC19755 |
Harvest35 | U35_24606 | 459 | 3e-25 | 387 - 446 | 100 | 60 / 60 | plus |
Contig Sequence (459 bp)
>U35_24606 459 Hv_44K_v2 CCGACGCCGCCCTCCGCGGCGGCATTGACCAGGTGTGGCATGTTGCCTGCGGCGGTAAGC TCGGCCTCGACCACCCCTACATCAACCCCGCCGCGTCGCCGGAGGAGTTGAGCCAGCTCG GGTGCGTCCGTGTGCTCGTCGCCACGGCGGAAAACTGCTGGTTCGTGGAGAGGTCGCGCG CCTACGCGGCAAGGGTCAAGGCGTGCGGGTGGGGCGGCGAGCTCGAGTTCTACGAGACCA ATGCCGACGGGCATGTCTACTTCTTGCTCAAACCCGACTGCGAGAACGCCGCCAAGGAGC TCGCCGTCGTGGCCGACTTCGTAAGGCGCTGTTGAGTCTTTTTCTCTTGTTCGCGATTCA GTAACAGAAGCTGAGGAGCAAATAATCTTGTCCTTTATTTCCATGGTTCTGAATTCAAAA ATGAGTGTACTTTCGAGCTCTTGAAAAAAAAAAAAAAAA
Homology of Contig U35_24606 to Model Species (E-value threshold 1e-50)
Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
---|---|---|---|---|
Rice v7 | None | |||
Brachypodium v1_2 | Bradi4g32330.1 | 323 | 8e-52 | |
Arabidopsis v10 | None |