- Probe CUST_8031_PI390587928
- Source Contig U35_24607
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_8031_PI390587928 | Hv_44K_v2 | TGGATGAGGAAAGTTTGGAAAGTGGAGATAAGGAGCCTATTAGATTGAGGATAGCATTAG | 605 | GeneList: turquoise MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.132 | 1.207 | 1.700 | 0.689 | 0.558 | 0.477 |
| Raw | 63.950 | 98.501 | 129.189 | 72.116 | 23.446 | 22.234 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_38967.2 | 1520 | 2e-24 | 739 - 798 | 100 | 60 / 60 | minus | None |
| MLOC | MLOC_38967.1 | 1284 | 2e-24 | 563 - 622 | 100 | 60 / 60 | minus | None |
| MLOC | MLOC_38967.3 | 2515 | 2e-24 | 739 - 798 | 100 | 60 / 60 | minus | None |
| MLOC | MLOC_38967.4 | 1216 | 2e-24 | 555 - 614 | 100 | 60 / 60 | minus | None |
| JLOC1 | JLOC1_25381.1 | 1455 | 8e-25 | 658 - 717 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC19824 | 667 | 3e-25 | 606 - 665 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_24607 | 667 | 3e-25 | 606 - 665 | 100 | 60 / 60 | plus |
Contig Sequence (667 bp)
>U35_24607 667 Hv_44K_v2 AGTACAGATTGCAACAGAAGCGATGGGATGTATTAGTAAAAAGAATATGGCTGCGCCGGA GCAAGGACCAATTACTTTACCTGGTAAAAAGAAGTGCTTTGCTTGTAAAGAGACATCACA CAATTTGGATCAATGTAGGATAAAAGACAAACTGGGTACTGTGGCCCGGCTATTTGGACG TTCTACAAGCTTTCCATTCTACATGATCCAACCTTCAAAGGAAGTTGTCAAAAATGAAAA ATTGTACCACCACTGCCTGCTGATCACTTCTAATACCTGTAACTTGGACCCGGCAAGAGT GAAAACTGAACTAAACAAGTTCTGGGAGCTGACTGATGACTGGGATATAAGGAGAGAAGG TAGACAGAATTTCGTAGCATCCTTCAACTCAGAGGATGACCTGCTAAGCTGTTTAAAGCC TCCCAATGTAGAAACATTTCTGGATGAAAAGGAGGTGAATTTCAGTGTAGCAATGTGGGA TGGAGGCGATGGGGAAAAGCTTGACTTGATCAAAGAGTGGCTTTTGGTCTATGGGGTCCC AGATGCATACAGAAACTGGAAGGAGCTATATCAAGTGGCATCTGCAGTTGGAGTTCTGCT TGAGGTGGATGAGGAAAGTTTGGAAAGTGGAGATAAGGAGCCTATTAGATTGAGGATAGC ATTAGGA
Homology of Contig U35_24607 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os02g12840.1 | 882 | 7e-63 | protein|DEAD-box ATP-dependent RNA helicase, putative, expressed |
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |