barSeed - Barley Seed Development Database

Probe CUST_8030_PI390587928

Source Contig U35_24608

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_8030_PI390587928	Hv_44K_v2	GGCGCTCCACGAGGAGGTCGCCGTCGAGTTCGAGGAGATGGAAGGCATGGTCGGCGTGCC	495	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK354140	1919	2e-24	501 - 560	100	60 / 60	plus	ABC23472
MLOC	MLOC_62588.1	1758	2e-24	1040 - 1099	100	60 / 60	minus	None
JLOC1	JLOC1_40969.1	2030	8e-25	1381 - 1440	100	60 / 60	minus
Harvest35	U35_24608	595	3e-25	496 - 555	100	60 / 60	plus

Contig Sequence (595 bp)

>U35_24608 595 Hv_44K_v2
GCATCATCCGTCCGAGGCTCCTAGTCGATCGCGCACCAACCAAATGGAGACCCCGACCGT
CGTGCTGCTGCCCGTCTGGTCCGCCGGCCACCTCATGTCCATGTTCGACGCCGGCAAGCG
GCTGCTTGCCCGCAGCGGCGGCGGGCTGTCGCTCACGGTGCTCGTCATGCAGGCGCCGGC
GGCGAACGACAGGGCCGAGGTCGCCGCCCACATACAAAGGGAGGAGGCGTCCGGCCTGGA
CATCCGCTTCCAGCACCTCCCCGCCGTCGAGCCCCCGACGGACTGCCTGGGCATCGAGGA
GTTCGTCTCCCGGTTCGTGCAGCTCCACGCGGCCCACGTGAAGGCAGCCATCTCCGGCTT
GGCATGCCCCGTGGCCGCGCTCGTCGTCGACTTCTTCTGCACAACGATGCTCGACGTGTC
CCGGGAGCTAGCCGTGCCGGCCTACGTCTACATCACAGCCGACGCCGCCTTCTACGCGCT
CCTCCTGCGCTTGCCGGCGCTCCACGAGGAGGTCGCCGTCGAGTTCGAGGAGATGGAAGG
CATGGTCGGCGTGCCTGGCCTGCCGCCGGTGCCACCGTCGTCCCTCCCGGTTCCG

Homology of Contig U35_24608 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g32020.1	475	5e-60	protein\|UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed
Brachypodium v1_2	Bradi1g26760.1	478	2e-69
Arabidopsis v10	None