- Probe CUST_8025_PI390587928
- Source Contig U35_12633
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_8025_PI390587928 | Hv_44K_v2 | GACCATGTTAACATGCTACTGCCGCTGTCACGCTAATTAAGATGCGTGTTTGCTAAAAAA | 273 | GeneList: floralwhite MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.252 | 0.152 | 2.012 | 3.168 | 1.333 | 1.100 |
| Raw | 7.030 | 5.737 | 89.587 | 201.514 | 34.105 | 30.403 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK364194 | 1899 | 7e-23 | 1820 - 1876 | 100 | 57 / 57 | plus | ABC23669 |
| MLOC | MLOC_39175.1 | 549 | 7e-23 | 430 - 486 | 100 | 57 / 57 | plus | ABC23669 |
| JLOC1 | JLOC1_25525.1 | 537 | 4e-23 | 413 - 469 | 100 | 57 / 57 | plus | |
| Harvest21 | ABC23669 | 343 | 3e-25 | 12 - 71 | 100 | 60 / 60 | minus | ABC23669 |
| Harvest35 | U35_12633 | 344 | 3e-25 | 274 - 333 | 100 | 60 / 60 | plus |
Contig Sequence (344 bp)
>U35_12633 344 Hv_44K_v2 TGCCGGGGGACGGCGACGACGCCAAGATCGACATGGAGGAGGCCGACGGGCTGGTGTGCG CGCGCAGGCACCCGCTGCTGCTCCGCGCCTCGCCGCGCCTCAGCCCCTTCCCGGCGGTCG TCTAGCCTGGCCCGGCCGGCCGTGCCGCACGTACGTACGACGCCAGGTCCGGCCGGGCGT CGCCGTCGTGCATGTCCCTATGTACTTTTTTTTCTTGTGTCGTGCGTACGTACGTGCGCG TCAAGAGTGTTTGTTTCACCTACTTATATTGGTGACCATGTTAACATGCTACTGCCGCTG TCACGCTAATTAAGATGCGTGTTTGCTAAAAAAAAAAAAAAAAA
Homology of Contig U35_12633 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |